PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2199
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 302aa    MW: 32547.6 Da    PI: 6.281
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2199genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.25e-192373256
          AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                 ++ GVr+++ +grWvAeI+d      ++ r +lg+f+taeeAa+a++ a+++l+g+
  Gh_A12G2199 23 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDDAARALRGA 73
                 689******.7*********....4456*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.6E-292380IPR001471AP2/ERF domain
PfamPF008472.7E-132372IPR001471AP2/ERF domain
CDDcd000182.75E-212380No hitNo description
PROSITE profilePS5103220.6792380IPR001471AP2/ERF domain
SMARTSM003802.6E-342386IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-202480IPR016177DNA-binding domain
PRINTSPR003674.8E-82435IPR001471AP2/ERF domain
PRINTSPR003674.8E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSVPIRADVV GGKKKSSSRG HHRFVGVRQR PSGRWVAEIK DSLQKVRLWL GTFDTAEEAA  60
RAYDDAARAL RGANARTNFE LAGPQLASSS STNRFSFDKL QPFSFEEACG KGGSDDGDGF  120
IGALKAKLLD RKGLKVLSLA NPAVVPPPQR IGNMNLVQGP TSKPDGEVAV GHIEAQWYQP  180
VQSQTPSMTS KIWSNEPSFE AATWGAQMNQ VPPNGLFDIS TLTAATSTWS LPGTAVSTMD  240
LSFPNQCQIE LPVNMPISQI NGTTTESVWS SEQQFLQCDI DTLSGPIGSW GDPYLYVSSV  300
LG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1521791271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716454.10.0PREDICTED: uncharacterized protein LOC107929522
TrEMBLA0A1U8LTB00.0A0A1U8LTB0_GOSHI; uncharacterized protein LOC107929522
STRINGGorai.008G261800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15994813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-19related to AP2 11