PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2192
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 410aa    MW: 45629 Da    PI: 9.1135
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2192genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.54.8e-32113217199
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 
                  f+kv tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +++l
  Gh_A12G2192 113 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTSDKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGaGElGKGRL 210
                  89**************************99555568889************************************************7769999**** PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  ++ ++r+
  Gh_A12G2192 211 FIDWRRR 217
                  ****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.7E-42103221IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-30110217IPR015300DNA-binding pseudobarrel domain
CDDcd100176.69E-27111200No hitNo description
SMARTSM010199.2E-23113218IPR003340B3 DNA binding domain
PROSITE profilePS5086314.819113218IPR003340B3 DNA binding domain
PfamPF023621.4E-29113217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDFESKEEQM GSKGKLPFSH SSSSSNSSSS QYKTQLGPFG INNTRWEPHH QQMSPNWLGN  60
RYEAEEDKEA TTATTTVPAA ATASEGNSTR VDSDSTLELR SSASGNIEKE HMFDKVVTPS  120
DVGKLNRLVI PKQHAEKYFP LDSSTSDKGL LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG  180
WSRFVKDKKL DAGDIVSFQR GAGELGKGRL FIDWRRRPDA PDPQVSFRHH HFPLHRSIPW  240
NPLLMRPPPT GRDHLHLSQI NPLSRNTYYG GGSNLVNPGG TMGSVFYLRS AVVSTAPQMG  300
MGMMEWQQHG GVVKPVAFES VPVVQGQAAA KRLRLFGVNM DCPISESDEY DVISTTTIAN  360
ATMAASQTRP SSTSSQHPLQ LRLYNETPLP PTDFLNTNKG KASMSLDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-641082183114B3 domain-containing transcription factor NGA1
5os9_B7e-641082183114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716392.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_016716393.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotQ8LMR93e-75Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A1U8LPA60.0A0A1U8LPA6_GOSHI; B3 domain-containing transcription factor NGA1-like
STRINGGorai.008G261100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-76B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]