PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2177
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRF
Protein Properties Length: 466aa    MW: 50862.1 Da    PI: 6.3219
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2177genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.82.2e-24209252144
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  d+ep+rCrRtDGKkWRCsr+v +++k+CErH h++r rsrk++e
  Gh_A12G2177 209 DPEPWRCRRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVE 252
                  79***************************************987 PP
2QLQ58.42.1e-20153187236
          QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                  +FTaaQ+q+L++Q ++yKy++a++PvP+eLl +++
  Gh_A12G2177 153 PFTAAQWQELERQTMIYKYMMASVPVPAELLIPLT 187
                  9******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-12152188IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.866153188IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-14153186IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.479209253IPR014977WRC domain
PfamPF088799.6E-20210252IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDTRNNAFVG TEKGLGRTDE ECDVGLGLMM MQQVEESCPN KSFMAMLPPH NHNHLSSSSS  60
SSSSSSSSCY VEGFDGGASG GGPLVCNTSN QEPCRGDIYD VVGAASASAS VSSAAAAVVL  120
KSLHHHSFSA DPPFPHHFSV GEMAAAPVNA RVPFTAAQWQ ELERQTMIYK YMMASVPVPA  180
ELLIPLTKNP SNVAIKGSLE LGFSSNSSDP EPWRCRRTDG KKWRCSRDVA PDQKYCERHS  240
HKSRPRSRKP VELPNHSNIN INNNDHKSQT LHNMASDGTT NQPHQNPHFT NHHDPHFFTS  300
SFDQSRCLEW FMKGETTVPF ASNPEWQRTN YGVNLQAQHH LNEQFTPSLA SLEGSLNLNQ  360
THSQETRAFI DAWSIAEREV VEMEGIGSCK RPVSSNEKLP LSSLTLSMSG GGNENNQEED  420
DENSHHEMRG TLSWMGSSPG GPLAEALCLG IATSQTTSTS SCSKST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.92570.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1085412e-73DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016732758.10.0PREDICTED: growth-regulating factor 8-like isoform X1
TrEMBLA0A1U8N4J70.0A0A1U8N4J7_GOSHI; growth-regulating factor 8-like isoform X1
STRINGGorai.008G259500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.16e-38growth-regulating factor 8