PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G2154
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Dof
Protein Properties Length: 241aa    MW: 26187.2 Da    PI: 8.464
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G2154genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof67.22.6e-2114492863
       zf-Dof 28 qPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                   ryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss
  Gh_A12G2154 14 GHRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 49
                 57******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088415.622146IPR003851Zinc finger, Dof-type
PfamPF027015.2E-151646IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-91640IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MALSLFHPWI LLNGHRYFCK TCRRYWTEGG SLRNIPVGGG SRKNKRSSSS SSSSISTSLT  60
SSKKLPGLVT PPSLSQCSTQ NPKIHDGQDL NLAFPTASQG YRSLSELVQL PLENNNKSQI  120
PSSSSSSPTT SQLSALELLT GITSRGFNSF IPMPVPDPNT VYTPGNFPMQ DFKPTLNFSL  180
DGLGNGYGSL HGVQETTGRL LFPFEDLKQV STTTDIDQHK DQGDSTGYWT GGGDLFGFLH  240
Y
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.146120.0boll
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2431010.0AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634903.11e-153PREDICTED: dof zinc finger protein DOF4.6 isoform X1
TrEMBLA0A0D2Q1T91e-160A0A0D2Q1T9_GOSRA; Uncharacterized protein
STRINGGorai.008G256800.11e-160(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34332761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.44e-26Dof family protein