 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_A12G2065 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HSF |
| Protein Properties |
Length: 311aa MW: 34725.1 Da PI: 6.6277 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A12G2065 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 113 | 2e-35 | 21 | 112 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98
Fl k+y++++d+++++lisw+e+g++f+v+++ efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF++ F++g+k+ll++i+
Gh_A12G2065 21 FLAKTYHLVDDPAVDDLISWNEDGSAFIVWHPAEFARDLLPRYFKHNNFSSFVRQLNTYGFRKMVPDR---------WEFANACFRRGEKKLLRDIH 108
9****************************************************************999.........******************** PP
XXXX CS
HSF_DNA-bind 99 rkks 102
r+k
Gh_A12G2065 109 RRKI 112
*985 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MACGSTASAT ADSQRPLPTP FLAKTYHLVD DPAVDDLISW NEDGSAFIVW HPAEFARDLL 60
PRYFKHNNFS SFVRQLNTYG FRKMVPDRWE FANACFRRGE KKLLRDIHRR KISPPAATPA 120
TVTVAVVPCE VSPSNSGDEQ VISSHSPPVA TILNGMTSCT TTSELLEENE RLRKENMQLR 180
QELTQLKGLC NNILTLMTNH ASGQLESHSI LAEGKALDLL SARDSARSTE DSGSKEVAEE 240
EDVTPKLFGV SIGVKRVRRE GEDKMRNSCQ VRQQDTEPAS KMKEEPWMGN VMIKNRGSWS 300
LGNDQTIYNA I
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2ldu_A | 2e-25 | 21 | 113 | 20 | 123 | Heat shock factor protein 1 |
| 5d5u_B | 2e-25 | 21 | 110 | 29 | 129 | Heat shock factor protein 1 |
| 5d5v_B | 2e-25 | 21 | 110 | 29 | 129 | Heat shock factor protein 1 |
| 5d5v_D | 2e-25 | 21 | 110 | 29 | 129 | Heat shock factor protein 1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
