PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Gh_A12G2049

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 303aa MW: 34657.3 Da PI: 6.845

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G2049	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	23.2	1.2e-07	252	285	21	54
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Gh_A12G2049 252 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285 469*****************************87 PP
2	ELK	27.3	8.4e-10	206	227	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L+++Y++++ ++++E++ Gh_A12G2049 206 ELKIELKQGYKSKIEDVREEIL 227 9*******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	7.9E-16	37	81	IPR005540	KNOX1
Pfam	PF03790	3.2E-15	39	80	IPR005540	KNOX1
SMART	SM01256	3.6E-23	95	150	IPR005541	KNOX2
Pfam	PF03791	1.7E-17	98	149	IPR005541	KNOX2
PROSITE profile	PS51213	9.568	206	226	IPR005539	ELK domain
Pfam	PF03789	1.7E-4	206	227	IPR005539	ELK domain
SMART	SM01188	0.0081	206	227	IPR005539	ELK domain
PROSITE profile	PS50071	11.645	226	289	IPR001356	Homeobox domain
SMART	SM00389	1.2E-10	228	293	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-16	228	292	IPR009057	Homeodomain-like
CDD	cd00086	1.18E-11	229	290	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.3E-25	233	292	IPR009057	Homeodomain-like
Pfam	PF05920	1.0E-17	246	285	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MQEPELGMMA NFGGTTTAAI GGLSSRELSV PLDQNHRQLK AEIATHPLYD QLLTAHVSCL 60 RVATTIEQLP LIDAQLAQCH NVLRSYASQH PQHGHSLSPH HRQDLDNFLA QYLIMLCRFK 120 EELQQHVRVD AVEAVMACRE IENNLHALTG VTLGESTGAT MSDDEDELQM DFPLDNSGVE 180 ANDLMGFGPL LPTESERTLM ERVRKELKIE LKQGYKSKIE DVREEILRKR RAGKLPGDTT 240 SVLKNWWQQH SKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHTN YQSTTSLKSK 300 RKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	282	302	RKRNWHTNYQSTTSLKSKRKR

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in secondary cell wall biosynthesis. {ECO:0000269\|PubMed:15980264}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016724639.1	0.0	PREDICTED: homeobox protein HD1-like
Refseq	XP_017642739.1	0.0	PREDICTED: homeobox protein HD1-like
Swissprot	Q9FPQ8	1e-157	KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBL	A0A0B0PS88	0.0	A0A0B0PS88_GOSAR; Homeobox protein knotted-1-like 7
TrEMBL	A0A1U8MGE6	0.0	A0A1U8MGE6_GOSHI; homeobox protein HD1-like
TrEMBL	A0A2P5XKZ2	0.0	A0A2P5XKZ2_GOSBA; Uncharacterized protein
STRING	Gorai.008G242800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM444	28	158

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62990.1	1e-160	KNOTTED-like homeobox of Arabidopsis thaliana 7

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He JB, et al. KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis. J Integr Plant Biol, 2018. 60(6): p. 514-528 [PMID:29393579]