PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 301aa MW: 33809.8 Da PI: 7.5589

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1960	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.7	1e-18	137	191	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k Gh_A12G1960 137 RKKLRLSKDQSAILEENFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 191 788899***********************************************98 PP
2	HD-ZIP_I/II	128.4	3.1e-41	137	226	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEe+F+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l Gh_A12G1960 137 RKKLRLSKDQSAILEENFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENQRLQKEVQELR-AL 226 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	1.6E-29	1	111	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	6.9E-18	119	190	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.15E-18	126	194	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.329	133	193	IPR001356	Homeobox domain
SMART	SM00389	1.1E-15	135	197	IPR001356	Homeobox domain
Pfam	PF00046	3.4E-16	137	191	IPR001356	Homeobox domain
CDD	cd00086	5.27E-15	137	194	No hit	No description
PRINTS	PR00031	2.1E-5	164	173	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	168	191	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.1E-5	173	189	IPR000047	Helix-turn-helix motif
Gene3D	G3DSA:1.20.5.170	5.7E-4	191	229	No hit	No description
SMART	SM00340	5.0E-24	193	237	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.4E-11	193	227	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MAEKEDLGLS LSLSFPQNHH SLQRNLRPSL VPSSANSCSS PSTLTLNKHS WNDSSPPSDH 60 NLESFRAEMG SIFRGIDMNI LPSTADCEEE AGVSSPNSTI SSVSGKRSER EGNGDELEIE 120 KSSSRGISDE EDGDTSRKKL RLSKDQSAIL EENFKEHNTL NPKQKLALAK QLGLRPRQVE 180 VWFQNRRART KLKQTEVDCE FLKRCCENLT EENQRLQKEV QELRALKLSS TQFYMQMTPP 240 TTLTMCTSCE RVAVPPNPPS STTVDPRSHH QLAQTHQRAF HINPWAPSAA HRPLDALRPR 300 S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	141	SRKKLRL
2	185	193	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.9416	0.0	boll\| ovule\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269\|PubMed:12492842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269\|PubMed:12492842}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017634265.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT4-like
Swissprot	P46601	1e-102	HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBL	A0A0B0N8D8	0.0	A0A0B0N8D8_GOSAR; Homeobox-leucine zipper HAT4-like protein
STRING	Gorai.008G233200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1563	26	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	1e-96	homeobox protein 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697]