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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G1936 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 425aa MW: 47699.6 Da PI: 8.7257 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 73.5 | 3.6e-23 | 25 | 113 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wtk+e+laLi+a+++++ +lrrg+lk+ +W++vs+++ ++ g +s++qC++k+e+l+kry+++k+++ k++ + ss++ ++ l+ Gh_A12G1936 25 CWTKDETLALIDAYKDKWFALRRGNLKASDWDAVSDVVssaSDPGTVKSSVQCRHKIEKLRKRYRAEKQRSLKNSGKFSSSWDLYPLLD 113 8*************************************998899***************************************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.8E-21 | 24 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MSTTTSPPLP QPSSATAARR VPPPCWTKDE TLALIDAYKD KWFALRRGNL KASDWDAVSD 60 VVSSASDPGT VKSSVQCRHK IEKLRKRYRA EKQRSLKNSG KFSSSWDLYP LLDSMNFAST 120 SVAGSDDQDH TIDHRVTVFG DFCLKSNKHE NIDGNSGSNL GFDREFRGGY NSSFNFDHKW 180 QENGGFVAKG IKKFKSDGRI GDGYGSMVDF DHSFGQHVDG LGEFPLKTLG DRSFLNVGFK 240 SKNYGCPNLN YDYDNDSKEY SIDEEMGFRA RDSGAWDSVP QGIHQKKRGR VDMNFEPGGD 300 CRGLNGDASC SRPGLERKNA GAGVKRGVDP VDEMVSSIKL LAEGFVRMEK MKMEMLKEIE 360 KMRMEMEMKH NEMILESQQK IVDAFSSALL SEKKKKKKKP SLMFSNMNGN GVGEWQEDAF 420 IKKER |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 391 | 399 | EKKKKKKKP |
2 | 392 | 398 | KKKKKKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.21161 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017634670.1 | 0.0 | PREDICTED: uncharacterized protein LOC108476824 | ||||
TrEMBL | A0A0D2T5E1 | 0.0 | A0A0D2T5E1_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.008G230600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10483 | 18 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 7e-24 | Trihelix family protein |