PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 236aa MW: 26263.4 Da PI: 8.0648

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1784	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	67.1	3.4e-21	90	141	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+++AeIrdp + k +r++lg+f+ta eAaka+++a+ kl+g Gh_A12G1784 90 SHYRGVRRRP-WGKFAAEIRDP---NkKGARVWLGTFDTAIEAAKAYDRAAFKLRG 141 79******.******9...4345***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.22E-32	90	150	No hit	No description
SuperFamily	SSF54171	1.5E-23	90	151	IPR016177	DNA-binding domain
Pfam	PF00847	2.5E-15	90	141	IPR001471	AP2/ERF domain
SMART	SM00380	4.0E-38	91	155	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.4E-32	91	151	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.645	91	149	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.7E-14	92	103	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.7E-14	131	151	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MACSDETSAQ LELIRQHLFT DFASMETPPP FYQLSNSESS HVYSPTRLKQ SSLSQRRPSI 60 NVMIPPTSFN ISPNPVPDSA AVAVESYEKS HYRGVRRRPW GKFAAEIRDP NKKGARVWLG 120 TFDTAIEAAK AYDRAAFKLR GSKAILNFPH EAGKSNFSES GKRRRSVEEG EGEKRVSLLE 180 CKAGRREEEV TVAECGTPSN QTGIGDNEDI NEIFGGPLLS PLSSFPWFGY SRLEVM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	4e-29	91	149	5	63	ATERF1
3gcc_A	4e-29	91	149	5	63	ATERF1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.12309	0.0	boll

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016721164.1	1e-175	PREDICTED: ethylene-responsive transcription factor ERF105-like
Swissprot	Q8VY90	3e-55	EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBL	A0A2P5XVZ3	1e-174	A0A2P5XVZ3_GOSBA; Uncharacterized protein
STRING	Gorai.008G214000.1	1e-160	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24552	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51190.1	1e-57	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Moore M,Vogel M,Dietz K The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana. Plant Signal Behav, 2014. 9(10): p. 976479 [PMID:25482793] Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation. Plant Cell Environ., 2017. 40(1): p. 108-120 [PMID:27723941] König K,Vaseghi MJ,Dreyer A,Dietz KJ The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves. Physiol Plant, 2018. 162(3): p. 262-273 [PMID:28984358]