PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A12G1618

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 377aa MW: 42701.5 Da PI: 7.3437

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G1618	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	74.6	7.7e-24	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gilKKA+ELS+LCd+ + +++fs+tgk Gh_A12G1618 9 KRLESYSNRQVTYSKRRTGILKKAKELSILCDIHIILLMFSPTGK 53 689****************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.9E-30	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.077	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.84E-26	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.75E-26	2	82	No hit	No description
PRINTS	PR00404	1.6E-18	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-20	11	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-18	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.6E-18	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFHGE 60 RSTIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD LNIQDFLGAT QSVEEMTNEV 120 SMLQARLNEV NKRLSYWNNP DKIDNIEHLR QMEDSLRESI ERIRIHKENY GKHHLLPLES 180 TSQFQNAMPL PVMIGGVQEA QPVTWLPNND NQQMLLHNES NFLPNLDTEC PTDGSLAGYS 240 GFFVPGKQTD IGNSVQVDNT IQESNVLNDL GNNAFLNSQL GKQYLYPQFS ASNLQDDEKL 300 KSEMVGNLQG GPGVYQVITD FEAPRTMSNG GHQAWITSSG PCGIAMFDGN SYHQELNLPA 360 KSLIQIVVYR SKQNRLL

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MGRVKLKIKR LESYSNRQVT YSKRRTGILK KAKELSILCD IHIILLMFSP TGKPTLFHGE  60
RSTIEEVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD LNIQDFLGAT QSVEEMTNEV  120
SMLQARLNEV NKRLSYWNNP DKIDNIEHLR QMEDSLRESI ERIRIHKENY GKHHLLPLES  180
TSQFQNAMPL PVMIGGVQEA QPVTWLPNND NQQMLLHNES NFLPNLDTEC PTDGSLAGYS  240
GFFVPGKQTD IGNSVQVDNT IQESNVLNDL GNNAFLNSQL GKQYLYPQFS ASNLQDDEKL  300
KSEMVGNLQG GPGVYQVITD FEAPRTMSNG GHQAWITSSG PCGIAMFDGN SYHQELNLPA  360
KSLIQIVVYR SKQNRLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	3e-14	1	92	1	90	MEF2C
5f28_B	3e-14	1	92	1	90	MEF2C
5f28_C	3e-14	1	92	1	90	MEF2C
5f28_D	3e-14	1	92	1	90	MEF2C
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577441	6e-45	JX577441.1 Gossypium hirsutum clone NBRI_GE9263 microsatellite sequence.
GenBank	KU896425	6e-45	KU896425.1 Hibiscus cannabinus microsatellite HC_ES_49_GAG sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016722133.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_016722134.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_016722135.1	0.0	PREDICTED: agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	1e-110	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A1U8M5U5	0.0	A0A1U8M5U5_GOSHI; agamous-like MADS-box protein AGL65 isoform X1
STRING	Gorai.008G194100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	1e-112	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]