PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1487
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 492aa    MW: 54011.2 Da    PI: 9.6487
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1487genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001598117221
                  EETTTTEEESSHHHHHHHHH CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                  +C+ Cgk F++   L  H++
  Gh_A12G1487  98 VCKECGKGFRSLKALCGHMS 117
                  8*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.01997119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.1897124IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-498125IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.6E-699121IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-6340362No hitNo description
PfamPF139128.6E-6340363IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.034340367IPR007087Zinc finger, C2H2
SMARTSM003550.37340362IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280342362IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-6421448No hitNo description
PfamPF139122.2E-8426448IPR007087Zinc finger, C2H2
SMARTSM003550.19426448IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871426448IPR007087Zinc finger, C2H2
PROSITE patternPS000280428448IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MKNAVFSKVL SFATKGSHVG SRHIRTHMKH DSFAETEEES ADMPINRLIS TANPRNIKRF  60
IVSEAGGQSA AYGLRENPKK TKRFSDSGNG SSLKEMLVCK ECGKGFRSLK ALCGHMSCHS  120
DNGEKQKVIM DSQSDTETSA PSKRRSRRGT PKTIGVYRNN NSENLGNGSS SVSEIVQEQE  180
EVAMCLMMLS RDSGCRKRMN SAPDSSDNNS VVLEDKSSSI DVTITIKNDM NRGGFLKMTK  240
QRDNKLKKSP ESDPSSENSD SGYFRNGPKK VESDDSVDGF LKNNEFKKPN IESGSGFRDM  300
DATSSKCLSK FKSVKTGSSK YDLRRNGKND YYSPQKGSKY ECLTCSKTFD SHRALGGHRA  360
SHTKVNGYNE SIQESYENNL ANDSFTAPMT DTKVTKASSN GKRLGVPRGS SYNAEKRLGS  420
EKNKGHECPF CFRVFKSGQA LGGHKRSHFV GGSDDRTLAI KQDSSDMPAL IDLNLPAPVE  480
EDALGNATGF MP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016703450.10.0PREDICTED: zinc finger protein 37-like isoform X2
TrEMBLA0A1U8KLZ80.0A0A1U8KLZ8_GOSHI; zinc finger protein 37-like isoform X2
STRINGGorai.008G178000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.15e-78C2H2-like zinc finger protein