PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G1084
Common NameWRKY79
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 509aa    MW: 55634.4 Da    PI: 7.343
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G1084genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30277335259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Gh_A12G1084 277 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKSILITTYEGNHNHH 335
                  7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-33262337IPR003657WRKY domain
SuperFamilySSF1182901.57E-27269337IPR003657WRKY domain
PROSITE profilePS5081129.126271337IPR003657WRKY domain
SMARTSM007742.1E-36276336IPR003657WRKY domain
PfamPF031063.4E-26278335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEKHHPSPFF HSDDLIRRRS SASDRTHDDS SDDHVKVKPH IMEMDFFSTD HHQDSKINTN  60
GSSSSFDVNT GLNLVSSRTP SEKKSNTEMS VLKIELERLH EENRRLKSML DHITRNYNEL  120
QGQLFMAVQK QALLAINKQQ VNKEGGVKGM PSHPIMSIQQ SMDPRRPSTT LDVNEPSATD  180
DKRTELSASS PANTTTSTMD VVSKDGNDDH YRTVHIQGKH VFVEDGIDQT CQQSWGTSPK  240
SSPMVDEPKK EEEQVPEVAF KKARVSVRAR SEAPMITDGC QWRKYGQKMA KGNPCPRAYY  300
RCTMAVGCPV RKQVQRCAED KSILITTYEG NHNHHLPPAA TAMAKTTSAA AAMVLSGSTT  360
SKDGLPNSSY LHSSLPYAST MATLSASPPF PTITLDLTQG PNPLPFIRPP PSPPTFPLPL  420
HGYPELSALP AMQIGQQQQQ HTASMVETVT AAIASDPNFT AVLAAAISTF MGAPPPPLPP  480
SNNGNNSTTS QALPGSPQLP QSCTTFSTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22263339176WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698280.0KF669828.1 Gossypium hirsutum WRKY transcription factor 79 (WRKY79) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708649.10.0PREDICTED: probable WRKY transcription factor 47
TrEMBLA0A1U8L6770.0A0A1U8L677_GOSHI; probable WRKY transcription factor 47
STRINGGorai.008G134300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.14e-72WRKY family protein
Publications ? help Back to Top
  1. Dou L, et al.
    Genome-wide analysis of the WRKY gene family in cotton.
    Mol. Genet. Genomics, 2014. 289(6): p. 1103-21
    [PMID:24942461]