PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 358aa MW: 40079.6 Da PI: 8.4265

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0866	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.2	3.5e-41	123	200	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Gh_A12G0866 123 RCQVEGCNVTLVNAKDYHRRHKVCETHSKAPKVVVLGLEQRFCQQCSRFHLVSEFDDSKRSCRRRLAGHNERRRKTSQ 200 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.9E-35	117	185	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.641	121	198	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.94E-39	122	202	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.3E-32	124	197	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MEHDDMFMGN RSQTGNKYNP NNATTNSFNF ETTLTESHAL NHPHQQQQRY SLYAGDGSSR 60 IHQSADPHLV CLKLGKRHYF EGSTDLNNNR HSAGGFSIGK KGKPYYDNLS GEGGGPSSST 120 GPRCQVEGCN VTLVNAKDYH RRHKVCETHS KAPKVVVLGL EQRFCQQCSR FHLVSEFDDS 180 KRSCRRRLAG HNERRRKTSQ DSATRNFAHV CCQTDNKPMT GSFPYVSSPT GRALSLLSSK 240 VDSWISPSNL STRSSAALRE LIVENRAAVL ARQLVLERDW HYIGEPQPAG SNPILVQHHS 300 MLDPHRWDFP FPEIGGQVTL DLMQASNTAF GMLSVRGKTK EEEEECSELW HSLQGTHG

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MEHDDMFMGN RSQTGNKYNP NNATTNSFNF ETTLTESHAL NHPHQQQQRY SLYAGDGSSR  60
IHQSADPHLV CLKLGKRHYF EGSTDLNNNR HSAGGFSIGK KGKPYYDNLS GEGGGPSSST  120
GPRCQVEGCN VTLVNAKDYH RRHKVCETHS KAPKVVVLGL EQRFCQQCSR FHLVSEFDDS  180
KRSCRRRLAG HNERRRKTSQ DSATRNFAHV CCQTDNKPMT GSFPYVSSPT GRALSLLSSK  240
VDSWISPSNL STRSSAALRE LIVENRAAVL ARQLVLERDW HYIGEPQPAG SNPILVQHHS  300
MLDPHRWDFP FPEIGGQVTL DLMQASNTAF GMLSVRGKTK EEEEECSELW HSLQGTHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-32	115	197	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.2618	0.0	boll\| ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622318	0.0	KJ622318.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016709740.1	0.0	PREDICTED: squamosa promoter-binding-like protein 7 isoform X1
TrEMBL	A0A1U8L534	0.0	A0A1U8L534_GOSHI; squamosa promoter-binding-like protein 7 isoform X1
STRING	Gorai.008G107300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15613	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.4	2e-38	squamosa promoter binding protein-like 10

Publications ? help Back to Top
Zhang X, et al. Genomic organization, differential expression, and functional analysis of the SPL gene family in Gossypium hirsutum. Mol. Genet. Genomics, 2015. 290(1): p. 115-26 [PMID:25159110]