PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0859
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 325aa    MW: 36833.8 Da    PI: 5.338
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0859genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0011426123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C ksF +   L  H+r+H
  Gh_A12G0859  4 HRCKLCLKSFINGRALGGHMRSH 26
                 79********************9 PP
2zf-C2H213.30.00025195217123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  Gh_A12G0859 195 YRCETCNRVFKSYQALGGHRASH 217
                  9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.38E-5331No hitNo description
PROSITE profilePS5015710.138431IPR007087Zinc finger, C2H2
SMARTSM003550.1426IPR015880Zinc finger, C2H2-like
PfamPF139125.8E-7427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM003550.02195217IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.08E-6195269No hitNo description
PfamPF139126.8E-11195219IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.801195222IPR007087Zinc finger, C2H2
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
PfamPF139121.3E-9246269IPR007087Zinc finger, C2H2
SMARTSM003550.46247269IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037247269IPR007087Zinc finger, C2H2
PROSITE patternPS000280249269IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEKHRCKLCL KSFINGRALG GHMRSHMLNL PIHVNQVSQE SVSASASYSS DEDDDDKKEQ  60
IYGLRENPKR SVRMVDPEFI DAGSVVVQDR ESETESSKNL TRRRSKRTWK TLYQHEEEEV  120
VKVNITESVS SISDTTTEED VAFCLMMLSR DQWKQHDEQE QEQEQEQDDE SEEETEESEE  180
YLKSTKPNRS TRGKYRCETC NRVFKSYQAL GGHRASHKKM KPYSPATEAI HEPPENVGTS  240
IPEKKTHECP VCFRIFSSGQ ALGGHKRSHV TGQVIATSTT KTAVTSSKKL GDSLIDLNLP  300
APMDDDDISQ IELSAVSDAE FVKPF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016709918.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1U8L9680.0A0A1U8L968_GOSHI; zinc finger protein ZAT9-like
STRINGGorai.008G106500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-63C2H2-like zinc finger protein