PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0771
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 328aa    MW: 36932.8 Da    PI: 4.5309
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0771genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17e-1958111356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Gh_A12G0771  58 KKRRLSVDQVKALEKNFEVENKLEPERKVRLAQELGLQPRQVAVWFQNRRARWK 111
                  566899***********************************************9 PP
2HD-ZIP_I/II126.51.2e-4057149193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy  Lk++y++lk + ++L++ +e+L +e++e
  Gh_A12G0771  57 EKKRRLSVDQVKALEKNFEVENKLEPERKVRLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKTSYETLKLNFDTLQHGNEALLKEIRE 149
                  69*************************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.04E-1949115IPR009057Homeodomain-like
PROSITE profilePS5007117.32953113IPR001356Homeobox domain
SMARTSM003891.5E-1756117IPR001356Homeobox domain
PfamPF000464.0E-1658111IPR001356Homeobox domain
CDDcd000862.17E-1658114No hitNo description
Gene3DG3DSA:1.10.10.601.3E-1960119IPR009057Homeodomain-like
PRINTSPR000311.5E-58493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000311.5E-593109IPR000047Helix-turn-helix motif
PfamPF021831.5E-15113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MKRSLGSSDS MATFMSICPT TDEESPRNNH IYSKELQSML DGLEEEGCLE EAGHVAEKKR  60
RLSVDQVKAL EKNFEVENKL EPERKVRLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG  120
LLKTSYETLK LNFDTLQHGN EALLKEIREL KAKLNGESVG SNLSVKEEAI VPETDDKTME  180
QSEPLPASSL ATSSEPVELN YECFKSSNNR VADAILFPEL KDGSSDSDSS AILNEDDHTN  240
NNTSNGAVSS SGVLQSQHLL MSPTTTSSFN FDSSSSSSQS SMNCFQFSKT TYLVKMEEHN  300
FFTADEACNF FSDEQAPSLQ WCYPEQWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.26771e-114boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5270862e-56HQ527086.1 Gossypium herbaceum clone NBRI_D2_391 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016668597.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A0B0PGV20.0A0A0B0PGV2_GOSAR; Homeobox-leucine zipper ATHB-16-like protein
TrEMBLA0A1U8HRD40.0A0A1U8HRD4_GOSHI; homeobox-leucine zipper protein ATHB-6-like
STRINGGorai.008G091100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-69homeobox protein 16