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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gh_A12G0726 |
| Common Name | HB4 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
HD-ZIP |
| Protein Properties |
Length: 281aa MW: 31221.2 Da PI: 8.009 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A12G0726 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62.2 | 7.9e-20 | 136 | 190 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq Lee F+++++++ ++++ LAk+l+Lt rqV vWFqNrRa+ k
Gh_A12G0726 136 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLTPRQVEVWFQNRRARTK 190
788899***********************************************98 PP
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| 2 | HD-ZIP_I/II | 124.9 | 3.6e-40 | 136 | 225 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rl+keq++lLEesF+++++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
Gh_A12G0726 136 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 225
69*************************************************************************************9.55 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MGLDDDACNT GLVLGLGFSS ALETPSKKPS CLKFEQPATT VAPPTTFEPS LTLGLFGDQG 60
YQVTKKSDVN KSGYLHHHEE PGAGDLYHRQ ASPHSAVSSF SSGRVKRERE VSSEELEVEK 120
NSSRVSDEDE EGVNARKKLR LTKEQSALLE ESFKQHSTLN PKQKQALAKQ LNLTPRQVEV 180
WFQNRRARTK LKQTEVDCEF LKKCCETLTD ENRRLQKELQ ELKALKLAAQ PFYMHMPAAT 240
LTMCPSCERI GGVADGNSKS PFSVASKPHF YNPYSNPSAA C
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 184 | 192 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HM134793 | 0.0 | HM134793.1 Gossypium hirsutum homeodomain-leucine zipper protein HD4 (HB4) mRNA, complete cds. |
| Publications
? help Back to Top |
- Qin YF, et al.
Three cotton homeobox genes are preferentially expressed during early seedling development and in response to phytohormone signaling.
Plant Cell Rep., 2010. 29(10): p. 1147-56
[PMID:20676891] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
Elife, 2017.
[PMID:27697148] - Song L, et al.
A transcription factor hierarchy defines an environmental stress response network.
Science, 2017.
[PMID:27811239]
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