PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0630
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 749aa    MW: 83173.3 Da    PI: 9.9038
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0630genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.38.1e-20211122100
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  fkv +   +l+ g+l +p+kf++++g++   s  ++le +sg  W+v+l   k+++r+ l++GW+eF++   L+ g fvvF+++g++ f  +v +f+k
  Gh_A12G0630  21 FKVIL-QETLRDGILGIPRKFVRKYGNQ--LSSPVKLEVPSGAIWQVEL--AKTDERVRLQNGWREFAEHYSLELGSFVVFRYEGNDHF--HVLIFDK 111
                  55553.46778899***********988..5567***************..**********************************9999..*****98 PP

                  S CS
           B3 100 s 100
                  s
  Gh_A12G0630 112 S 112
                  5 PP
2B367.12.4e-21392486196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f  v+ ps+v  ++r+ +p +fa+++  ++++   ltl +++g++W  kl +  +kk+++++ + GW+eFv++n+L++gD++vF+l+++ e  ++v++
  Gh_A12G0630 392 FMIVMQPSYVRGTCRMFIPSDFARKFLTVHKS--NLTLCNSTGKTWHAKLYHpaNKKPNAHLCG-GWREFVEDNHLNVGDICVFELIKHPEILMKVQI 486
                  677999********************666444..6***************66989999999666.*********************998665566665 PP
3B353.44.8e-17646741398
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   v  ps+ ++ + + +p +f +++  kk++  +++l+  +grsW+v++     +k++++ + +k W +F+ +n+L++gD++vF+l+++++  l v ++
  Gh_A12G0630 646 VVIHPSHIGSCSTVHIPEEFGKRYL-KKNG--EMMLRVADGRSWNVEYERigrNKGRKAGFGGKSWGQFAMDNELEVGDVCVFELMNENGNLLEVVIH 740
                  55668888888999**********4.3334..7***************666744445557888**********************9876665666666 PP

                  - CS
           B3  98 r 98 
                  r
  Gh_A12G0630 741 R 741
                  5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-2812112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2713112IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-2218110No hitNo description
PROSITE profilePS5086314.87519112IPR003340B3 DNA binding domain
SMARTSM010198.9E-2220112IPR003340B3 DNA binding domain
PfamPF023626.1E-1621111IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.6E-24386486IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-24387486IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-23390488No hitNo description
SMARTSM010192.9E-13392490IPR003340B3 DNA binding domain
PfamPF023625.2E-19392486IPR003340B3 DNA binding domain
PROSITE profilePS5086314.311392490IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-18637741IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-18639739IPR015300DNA-binding pseudobarrel domain
CDDcd100177.80E-21642741No hitNo description
SMARTSM010194.3E-19644743IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578644742IPR003340B3 DNA binding domain
PfamPF023622.0E-15646741IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MIEHTLQQAS TMFTSKTPHF FKVILQETLR DGILGIPRKF VRKYGNQLSS PVKLEVPSGA  60
IWQVELAKTD ERVRLQNGWR EFAEHYSLEL GSFVVFRYEG NDHFHVLIFD KSASETEYPH  120
TSTEGNDGDD HVSVEICDDV SASRKNKEKP DLPCSLPQKK ISTDSKLKNS SSHISLDEPC  180
SIKNKLRNLK KNENSSSSTG RVDAQRSIGN TDGTRSLVSD TNSSSQERCP SGSTELKDSK  240
FQKRKKRVDS QYSKKDLRDE FICSAKHDNG GVSGACGCLK PDLIGRTQPL AATEKQRAAD  300
IVSWSSSRLV SRKSKEKSHL PCPLPQKKMR IDSSNQHGQN SKLEVLSSGT SPDAQRSVKT  360
KAFSCVQRLA AIEKAHAVQI ASAFESTENP VFMIVMQPSY VRGTCRMFIP SDFARKFLTV  420
HKSNLTLCNS TGKTWHAKLY HPANKKPNAH LCGGWREFVE DNHLNVGDIC VFELIKHPEI  480
LMKVQIYPVV KNASKASGQQ ALGSIVSRVK TRSLVSDAEP NCQQSPSSSS ESKDLTDSHI  540
KTLHDSPLDQ KTKKKLTRSS AQPCKMTRTS LSGSIQAKGI KHEKGKSLNF QYSTEELGGG  600
LKNSAKGDSG RKSGARRCLK PDPVYQKQRA CTGGGAFRTS NPSFSVVIHP SHIGSCSTVH  660
IPEEFGKRYL KKNGEMMLRV ADGRSWNVEY ERIGRNKGRK AGFGGKSWGQ FAMDNELEVG  720
DVCVFELMNE NGNLLEVVIH RKLLLVEIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1636948927142B3 domain-containing transcription factor VRN1
4i1k_B1e-1636948927142B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637007.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X2
TrEMBLA0A0B0PB320.0A0A0B0PB32_GOSAR; B3 domain-containing transcription factor VRN1-like protein
STRINGGorai.013G245600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1837549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-24B3 family protein