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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G0629 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 742aa MW: 83982.4 Da PI: 8.6392 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.7 | 7.5e-17 | 16 | 99 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + + + l +p+kf++++g+ s + l+ +sg +W +l +k++g +++++GW+ F++ L+ g f+vF+++g+ +f +v +f+ Gh_A12G0629 16 ATIRDKKLGIPRKFVKKYGK--GLSSSVLLTVPSGDTWHAQL--TKSDGVVWFQNGWQAFAEYYSLQYGHFLVFRYEGNGKF--LVLIFD 99 34455669**********84..47778***************..********************************998777..999997 PP | |||||||
2 | B3 | 55.2 | 1.3e-17 | 225 | 323 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+ ++ ps+ + + +++pk+f+ ++ k++ + +ltl +++g++W+ ++ +y r+k + ++ GW++F an+L++gD++vF+l++++e l+v Gh_A12G0629 225 FLVIMQPSYINPGRKMCIPKEFTMKFL-KENLG-DLTLCTSEGKTWSTQYwRYisRNKYTKAIIHIGWRQFMLANNLEAGDVCVFELISQTESMLKVI 320 667788888888899********8884.44454.9***************433777777779999***********************9877767777 PP EE- CS B3 96 vfr 98 ++r Gh_A12G0629 321 IYR 323 766 PP | |||||||
3 | B3 | 55.2 | 1.3e-17 | 387 | 485 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+ v+ p + ++ l +p kf++++ ++ + + +l+ ++gr+W vk+ + ++++ + + W+ F+++n+L++gD++vF+l++r+e +++v+ Gh_A12G0629 387 FKVVMRPRYLILRCSLGIPYKFVKRYLDEE--KEEAILQVSDGRTWVVKFAVkvfTGGQHKA-EFSTWRAFARDNNLEVGDVCVFELINRHENSFKVS 481 5556677888889*************4332..3479**************775543333333.3369*********************9988889*** PP EE-S CS B3 96 vfrk 99 +f++ Gh_A12G0629 482 IFSA 485 9985 PP | |||||||
4 | B3 | 51.7 | 1.5e-16 | 636 | 727 | 1 | 91 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f ++ ps+v++ rl +p +f +++ + ++ + + +g++W k+ +++ l +GWk F+k+n+L+ gD++vF+++++++ + Gh_A12G0629 636 FTVAMQPSYVSNGYRLAIPLDFSRKYlrN---GSGNAILSMVGDGKTWLTKYHReaKGT--NprAKLIDGWKTFAKDNNLEIGDVCVFEMINSEGYQ 727 677899********************642...34445666678*********5544333..24588999********************98655544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.1E-26 | 2 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.63E-24 | 3 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.37E-20 | 7 | 99 | No hit | No description |
PROSITE profile | PS50863 | 13.86 | 8 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-17 | 9 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-13 | 17 | 99 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.7E-22 | 216 | 323 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-20 | 218 | 323 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.99E-22 | 223 | 323 | No hit | No description |
Pfam | PF02362 | 3.6E-16 | 225 | 323 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-11 | 225 | 325 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.184 | 225 | 325 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-21 | 378 | 484 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.08E-21 | 380 | 484 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.40E-23 | 385 | 484 | No hit | No description |
PROSITE profile | PS50863 | 13.874 | 387 | 486 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.3E-16 | 387 | 485 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-15 | 387 | 486 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-21 | 629 | 737 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-21 | 630 | 726 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-21 | 634 | 736 | No hit | No description |
Pfam | PF02362 | 4.6E-15 | 636 | 725 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.1E-13 | 636 | 738 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.438 | 636 | 738 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 742 aa Download sequence Send to blast |
MFAPKTPHFF KIILEATIRD KKLGIPRKFV KKYGKGLSSS VLLTVPSGDT WHAQLTKSDG 60 VVWFQNGWQA FAEYYSLQYG HFLVFRYEGN GKFLVLIFDM SASEIEYPCK SHIEDHNSDD 120 QVCLKLVKKE AKDDTCDGTL YETPPCKETR KKKKKKKRSR PPCSKPRKKL KTTQKDKNEK 180 DWEDESTREE DMQTKVPRDE HAFGVIEYDK ALQRASSFRS ENPFFLVIMQ PSYINPGRKM 240 CIPKEFTMKF LKENLGDLTL CTSEGKTWST QYWRYISRNK YTKAIIHIGW RQFMLANNLE 300 AGDVCVFELI SQTESMLKVI IYRVRQDTSC SSPLGGINSS ENGGNINSST LGSTESNHDC 360 LMRPMTPVEK ARAILKASNF KSKNPFFKVV MRPRYLILRC SLGIPYKFVK RYLDEEKEEA 420 ILQVSDGRTW VVKFAVKVFT GGQHKAEFST WRAFARDNNL EVGDVCVFEL INRHENSFKV 480 SIFSAAPGAN SSLSSQADDA EASQVASKNC LVPRIEADDD FGNCYAGNSG PAAQLTTIEY 540 QENEEEVNLT DDAIASQVAS KDWLVPKIEA DDDFGKCHVG NSSPAAQFPA IGYQETEEEV 600 QPTISTRPRG PQRLQAGEKA KALQRASGFK SQNPFFTVAM QPSYVSNGYR LAIPLDFSRK 660 YLRNGSGNAI LSMVGDGKTW LTKYHREAKG TNPRAKLIDG WKTFAKDNNL EIGDVCVFEM 720 INSEGYQLSL NVAIYKPHED QT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-16 | 207 | 731 | 25 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-16 | 207 | 731 | 25 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 157 | RKKKKKKKR |
2 | 149 | 170 | RKKKKKKKRSRPPCSKPRKKLK |
3 | 151 | 157 | KKKKKKR |
4 | 153 | 168 | KKKKRSRPPCSKPRKK |
5 | 154 | 169 | KKKRSRPPCSKPRKKL |
6 | 155 | 168 | KKRSRPPCSKPRKK |
7 | 165 | 171 | PRKKLKT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616762 | 1e-158 | JX616762.1 Gossypium hirsutum clone NBRI_GE61640 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635905.1 | 0.0 | PREDICTED: B3 domain-containing protein LOC_Os12g40080-like | ||||
TrEMBL | A0A1U8N7B6 | 0.0 | A0A1U8N7B6_GOSHI; B3 domain-containing protein Os03g0620400-like | ||||
STRING | Gorai.008G071300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16925 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-47 | B3 family protein |