PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Expression |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A12G0624

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 807aa MW: 87764.4 Da PI: 7.2124

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0624	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.1	3.5e-09	573	610	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+++qV++WF N R + Gh_A12G0624 573 FEHflHPYPSDADKLLLARQTGLSKNQVSNWFINARVR 610 664459******************************88 PP
2	BELL	94.2	1.1e-30	443	504	10	72
BELL 10 akLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++Llsl Vd+rY++y+eq+qtv++sF+ v+g g+a pYt+lA ka+SrhF+cLkdai+ q+ Gh_A12G0624 443 SHLLSL-SIVDRRYNHYCEQMQTVVNSFDLVMGFGAAVPYTALAKKAMSRHFKCLKDAITAQL 504 578886.68***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-71	351	502	IPR006563	POX domain
Pfam	PF07526	1.8E-48	356	501	IPR006563	POX domain
PROSITE profile	PS50071	12.584	551	614	IPR001356	Homeobox domain
CDD	cd00086	5.79E-13	554	615	No hit	No description
SMART	SM00389	6.6E-10	554	618	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-17	556	621	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.5E-28	557	620	IPR009057	Homeodomain-like
Pfam	PF05920	1.3E-17	571	610	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence Send to blast
MGIATSPVTP SILHQIPFQE KSNHSTNSMS QDYHHQAAAG IFSFSNGFER SAMSHQEQHQ 60 HQQQQQQHLV QKIRRDKQRV QGFEPPSLPL VGIESNALPV YEAEGMLSEM FDFPTGVAAS 120 AELLDQHVEP NYRAHRPPSN SNEWFSNRRG VVGGLGLVGE SKNHDNRDTL AAQQQHQQLP 180 SINADSAAAM NLFLMNPQPR SPSPPAPPSS SSNTLHMLLP NPSTSLQGFN VSGPAGGTFR 240 TTSTVLSPPQ FTWVPNSAHE ADDTGSQLNN SSQIGGVIEG QGLSLSLSSS LLHLEAAKAE 300 ELRMYYNQEA GSSSAAAAQF HYKNLATHNH HNLQGGVGEN HQVHVGFGSS LGMVNVIRNS 360 KYVKAAQQLL EEFCSVGRGN FKRNKSGRNN TNPTFNLPGS NGDGGSSSST KDPPPLSTAD 420 RIEHQRRKVK LLSMLDEACN LFSHLLSLSI VDRRYNHYCE QMQTVVNSFD LVMGFGAAVP 480 YTALAKKAMS RHFKCLKDAI TAQLKHSCEA LGEKDGAGNS GITKGETPRL RVLEQSLRQQ 540 RAFHQMGMVE QEAWRPQRGL PERSVNILRA WLFEHFLHPY PSDADKLLLA RQTGLSKNQV 600 SNWFINARVR LWKPMVEDMY QQEIKEEDED NNEGHNSNSA QKSTPSTTAG AAASTPSEPP 660 PTTAAAGGKR SEINAMENDP SLIAINRQGF SENQAKQCTH HDTSATNTTI IATGPPPPTT 720 FKATATEVAP PFSYGVDGTT TCRRGSNVSA DYGTTTRPGN DSDIGSTLIR FGTTTGDVSL 780 TLGLRHAGNM PENTSSFSVR DVGGLLN

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence Send to blast

MGIATSPVTP SILHQIPFQE KSNHSTNSMS QDYHHQAAAG IFSFSNGFER SAMSHQEQHQ  60
HQQQQQQHLV QKIRRDKQRV QGFEPPSLPL VGIESNALPV YEAEGMLSEM FDFPTGVAAS  120
AELLDQHVEP NYRAHRPPSN SNEWFSNRRG VVGGLGLVGE SKNHDNRDTL AAQQQHQQLP  180
SINADSAAAM NLFLMNPQPR SPSPPAPPSS SSNTLHMLLP NPSTSLQGFN VSGPAGGTFR  240
TTSTVLSPPQ FTWVPNSAHE ADDTGSQLNN SSQIGGVIEG QGLSLSLSSS LLHLEAAKAE  300
ELRMYYNQEA GSSSAAAAQF HYKNLATHNH HNLQGGVGEN HQVHVGFGSS LGMVNVIRNS  360
KYVKAAQQLL EEFCSVGRGN FKRNKSGRNN TNPTFNLPGS NGDGGSSSST KDPPPLSTAD  420
RIEHQRRKVK LLSMLDEACN LFSHLLSLSI VDRRYNHYCE QMQTVVNSFD LVMGFGAAVP  480
YTALAKKAMS RHFKCLKDAI TAQLKHSCEA LGEKDGAGNS GITKGETPRL RVLEQSLRQQ  540
RAFHQMGMVE QEAWRPQRGL PERSVNILRA WLFEHFLHPY PSDADKLLLA RQTGLSKNQV  600
SNWFINARVR LWKPMVEDMY QQEIKEEDED NNEGHNSNSA QKSTPSTTAG AAASTPSEPP  660
PTTAAAGGKR SEINAMENDP SLIAINRQGF SENQAKQCTH HDTSATNTTI IATGPPPPTT  720
FKATATEVAP PFSYGVDGTT TCRRGSNVSA DYGTTTRPGN DSDIGSTLIR FGTTTGDVSL  780
TLGLRHAGNM PENTSSFSVR DVGGLLN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	3e-16	560	617	1	58	Homeobox protein Meis1
4xrs_B	3e-16	560	617	1	58	Homeobox protein Meis1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.23366	0.0	boll

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016711842.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_016711849.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_016711855.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
TrEMBL	A0A1U8LFB7	0.0	A0A1U8LFB7_GOSHI; BEL1-like homeodomain protein 4
STRING	Gorai.008G070800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-155	BEL1-like homeodomain 2