PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Expression |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A12G0519

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 275aa MW: 31380 Da PI: 10.449

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0519	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	74.9	1.4e-23	59	151	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +fqr+wse Dei +Lq+l+ + s +d+ fy+ +++s+s ++ksql+eK+rrL+kKf+ +++ ++g +ps + hd+ f+lsk++W Gh_A12G0519 59 KFQRIWSEPDEIRFLQALLRS---HPLSFPKDLPLFYSSFSHSMSQPYTKSQLSEKLRRLRKKFRVVSSRLARGLNPSSLSLHDRALFDLSKRLWS 151 79***************87...5667788**************************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	2.2E-26	60	151	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDSSQPHPSK PSASKLPIKR KAPHHPQFFT PKLEYQPIIL PPPKPKPKPK PQPQTPPFKF 60 QRIWSEPDEI RFLQALLRSH PLSFPKDLPL FYSSFSHSMS QPYTKSQLSE KLRRLRKKFR 120 VVSSRLARGL NPSSLSLHDR ALFDLSKRLW SPEFASSSPF GKNSSGFNGV AGNGFDDCDT 180 IDDDGEVKIN GVSLHYDFAA GRDEVTSRET IDGVLAKGVL NAFDECLKEV RMMFMKPGVV 240 CMDTTERKWK EQRVSEFDVL GRRLRLVIEN SLTRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3057	0.0	boll\| ovule

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX578058	0.0	JX578058.1 Gossypium hirsutum clone NBRI_GE9999 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016701583.1	0.0	PREDICTED: sorbin and SH3 domain-containing protein 2-like
Refseq	XP_016701584.1	0.0	PREDICTED: sorbin and SH3 domain-containing protein 2-like
TrEMBL	A0A1U8KLI5	0.0	A0A1U8KLI5_GOSHI; sorbin and SH3 domain-containing protein 2-like
STRING	Gorai.008G058900.1	1e-165	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18042	8	9