PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0508
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 321aa    MW: 36450.3 Da    PI: 7.3026
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0508genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.31.3e-13256280226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ktelC+++ + G C+yG+ C+FaHg
  Gh_A12G0508 256 KTELCDTWEEIGSCPYGEHCQFAHG 280
                  8***********************8 PP
2zf-CCCH19.91.3e-06293318126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt  Cr  +++ +C+yG rC+F H+
  Gh_A12G0508 293 YKTQACRMVLAGQICPYGHRCHFRHS 318
                  9**********99**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-16250287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-9251286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.643254282IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-6254281IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-10256280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-11288321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-8289320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.291292320IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5292319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAVALAGAGL KRQVLRFFGY IEQVIFSFEC STIFIMEKIT SLSSDQDTIF PATATSCATI  60
YDQNYVSPSP FQTNHQQCHQ DIAADFSSMY NFIFPPHSLP LSPSSCSSSS SNDPHLNLNL  120
TSDATATTHR LNQARVVLEY DQLCDHYNIC FARLQALNRD IETLRRENSD LLVANNELMK  180
LLNLSSMAVM NNRNLQRKEL PKSVSVRSSN YLKLNHQQGP RNQQQVVNPL LGVQVSSDWR  240
REKAIELDVY NQGMAKTELC DTWEEIGSCP YGEHCQFAHG ITELRPVIRH PRYKTQACRM  300
VLAGQICPYG HRCHFRHSLT E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21256321570Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713596.10.0PREDICTED: zinc finger CCCH domain-containing protein 14
SwissprotQ9C9N33e-66C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1U8LG680.0A0A1U8LG68_GOSHI; zinc finger CCCH domain-containing protein 14
STRINGGorai.008G057400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-68C3H family protein