PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0506
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 253aa    MW: 29309.8 Da    PI: 9.8592
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0506genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.52.2e-15949141
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                 k ien+  r+  f kRr+ +lKKA+ELS+LCd++ ++ii+ 
  Gh_A12G0506  9 KLIENEKARKRVFEKRRTNLLKKAKELSILCDIKLLLIIYE 49
                 569************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.951148IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-19174IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-16160IPR002100Transcription factor, MADS-box
CDDcd001203.90E-18259No hitNo description
PRINTSPR004042.1E-10323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-141153IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGKRRTEMKL IENEKARKRV FEKRRTNLLK KAKELSILCD IKLLLIIYEH GKVKAEIWPH  60
NNVEAEQIIE WFKQQRIDKT ACDSSASKRR RFGDKFDISD HKNMINHYSE NQLRNLIFEL  120
DAKIAAVMNV IQSKQVLKGG AGSPKNMGKG KEAVIYQEPI KIPQHQSFQT YWPKKNFISY  180
PEFENSSSIP YVPLPVHYVD PSSIQSPYKD ANSSMGYYDP NVHPVLPCIY YPKMPGFPPQ  240
MNASDLGFFP PFN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5775742e-53JX577574.1 Gossypium hirsutum clone NBRI_GE9426 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713581.10.0PREDICTED: MADS-box protein FLOWERING LOCUS C-like
TrEMBLA0A1U8LG540.0A0A1U8LG54_GOSHI; MADS-box protein FLOWERING LOCUS C-like
STRINGGorai.008G057200.11e-175(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2217245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-12AGAMOUS-like 18