PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A12G0506

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 253aa MW: 29309.8 Da PI: 9.8592

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A12G0506	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47.5	2.2e-15	9	49	1	41
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 k ien+ r+ f kRr+ +lKKA+ELS+LCd++ ++ii+ Gh_A12G0506 9 KLIENEKARKRVFEKRRTNLLKKAKELSILCDIKLLLIIYE 49 569************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.951	1	48	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.94E-19	1	74	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-16	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00120	3.90E-18	2	59	No hit	No description
PRINTS	PR00404	2.1E-10	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-14	11	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-10	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.1E-10	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MGKRRTEMKL IENEKARKRV FEKRRTNLLK KAKELSILCD IKLLLIIYEH GKVKAEIWPH 60 NNVEAEQIIE WFKQQRIDKT ACDSSASKRR RFGDKFDISD HKNMINHYSE NQLRNLIFEL 120 DAKIAAVMNV IQSKQVLKGG AGSPKNMGKG KEAVIYQEPI KIPQHQSFQT YWPKKNFISY 180 PEFENSSSIP YVPLPVHYVD PSSIQSPYKD ANSSMGYYDP NVHPVLPCIY YPKMPGFPPQ 240 MNASDLGFFP PFN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577574	2e-53	JX577574.1 Gossypium hirsutum clone NBRI_GE9426 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016713581.1	0.0	PREDICTED: MADS-box protein FLOWERING LOCUS C-like
TrEMBL	A0A1U8LG54	0.0	A0A1U8LG54_GOSHI; MADS-box protein FLOWERING LOCUS C-like
STRING	Gorai.008G057200.1	1e-175	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22172	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	2e-12	AGAMOUS-like 18