PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0297
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 949aa    MW: 104234 Da    PI: 6.8057
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0297genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.47e-29629679252
       RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  Gh_A12G0297 629 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 679
                  799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.37618699IPR003035RWP-RK domain
PfamPF020421.0E-24631679IPR003035RWP-RK domain
SuperFamilySSF542777.11E-24848938No hitNo description
Gene3DG3DSA:3.10.20.2405.2E-24851932No hitNo description
SMARTSM006663.7E-28852935IPR000270PB1 domain
PROSITE profilePS5174528.175852935IPR000270PB1 domain
CDDcd064072.67E-44853934No hitNo description
PfamPF005641.5E-19854934IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    Send to blast
MEGGGGGFSP NSTTFGNLSD AAMDLDFMDQ LLVEGCWLET SDGFNFMQPT PSTSTPSPHC  60
FPVSGSNTFP FTINPHQMHQ GETDMQFAPS QTDNLSKTRS QNWGGVGNAS SLSQTGSFIV  120
EGTEMGSRWW IGPKAESGSS LSVKERLMQA IGYLKESTKD RDVLIQIWVP VTREGKHVLT  180
TEGQPYSVNT NSKSLKIFRD VSKSYNFPAE EDSNKSVGLP GRVFLGKLPE WTPDVRFFRS  240
EEYPRVSFAL KYNVGGSLAL PVFERASGTC LGVVEVVTTA QKINYHPELE YVCKALEAVD  300
LRTSHNFSPP NVEACNELYQ AALPEIAEVL RSVCKIYKLP LALTWAPCLS QGKSGCRHSD  360
ENYYNCVSTV DAACFVADDK FLGFLEACSE HHLFKGQGIV GRAFTTDKQC FATDITAFSK  420
TNYPLSHHAR MFKLRGALAI PLQSIFTGLV EFVLELFFPK DCHESEAQQQ MLNSLSSFMQ  480
QACQSLHVVM DKELEEEVIL PVKEAVVASD GISDKEETKF KLSSPNENSP EESSWIAHMM  540
EAQQKGKGVY VSWEYQKEEP KEEFKMTTSW EETRQELFNK HVLSDFGLLH QNAGSIASLE  600
GGGGDSSSSG GRHILARKKA GKKRRTKMEK TISLQVLRQY FAGSLKDAAK SIGVCPTTLK  660
RICRQHGITR WPSRKIKKVG HSLRKLQLVI DSVQGAEGAI QIGSFYSSFP ELSSPNFSGK  720
GPSSSKISNQ SKPSEPQIQS GVLSQGAAAA APKSPSSSCS QSSGSSTCCS TGAKQRSTSI  780
SALCSTDGLT VENPEGALKR ALSDADLQAL NQEEPKLLAR SQSHKTFGEL PSFETKPPLP  840
KSGGHKLRTA GALKVKVMYR EDKVRLSLQP SWGFKDLQQE IGRRFNIEDV SRIDLKYLDD  900
DEEWVLLTCD ADLEECIDIY KSSQSKTIKI SLEQASHPNL GSSFGSSAP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1621626KKRRTK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.33840.0boll| ovule
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016719377.10.0PREDICTED: protein NLP2-like
RefseqXP_016719386.10.0PREDICTED: protein NLP2-like
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLA0A1U8LXS80.0A0A1U8LXS8_GOSHI; protein NLP2-like
STRINGGorai.008G041100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein