PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0241
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 112aa    MW: 13131.3 Da    PI: 10.2807
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0241genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88.1e-13495189
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.se 89
                 f+kvltp  v ++  l+lp++ + +    +g++e +++l+++d  g+  +++++ r ++g   v+++ W +Fv++++L+  D+v F+ d++  +
  Gh_A12G0241  4 FVKVLTPIEVERR--LILPRESLPALprfEGSHEHGIMLQVKDDAGNLRKFRCKKRYGGGDkLVIETDWIQFVNSKKLRPDDVVAFYKDDDrVS 95
                 8999999999875..9******998899989999*******************663333336*************************7644333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-11393IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.3E-15393IPR015300DNA-binding pseudobarrel domain
CDDcd100173.73E-12392No hitNo description
PfamPF023621.5E-10497IPR003340B3 DNA binding domain
SMARTSM010195.7E-44107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MQLFVKVLTP IEVERRLILP RESLPALPRF EGSHEHGIML QVKDDAGNLR KFRCKKRYGG  60
GDKLVIETDW IQFVNSKKLR PDDVVAFYKD DDRVSGTLYR IEVKRRNYKL GL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435300.11e-67PREDICTED: B3 domain-containing protein Os04g0581400-like
TrEMBLA0A2P5YRI26e-76A0A2P5YRI2_GOSBA; Uncharacterized protein
STRINGGorai.008G027000.13e-54(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2216735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-08B3 family protein