PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A12G0182
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-PHD
Protein Properties Length: 851aa    MW: 94749.7 Da    PI: 4.868
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A12G0182genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.81.6e-127798211052
                  HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
     Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                     ++L+e F++n+yp+++++e LAk+l++t  qV+ WF N R
  Gh_A12G0182 779 AVKQRLNESFKENQYPDRSTKESLAKELDITFHQVSKWFDNAR 821
                  56789************************************99 PP
2PHD39.41.4e-13432487151
                  SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C+ Cg+     +++++lCdg C++ fH++Cl+++l +e++p +   wlC+ C++k
  Gh_A12G0182 432 FCAKCGSkdLSPNNDIILCDGaCDRGFHQYCLQPPLLKEDIPPDdeGWLCPGCDCK 487
                  6999**966666********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.31E-14422490IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.1E-13428487IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.145430487IPR019787Zinc finger, PHD-finger
PfamPF006284.4E-11432487IPR019787Zinc finger, PHD-finger
SMARTSM002492.6E-10432485IPR001965Zinc finger, PHD-type
CDDcd155043.34E-28432484No hitNo description
PROSITE patternPS013590433484IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466896.84E-12763824IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-12766821IPR009057Homeodomain-like
PROSITE profilePS5007112.195767827IPR001356Homeobox domain
SMARTSM003892.6E-9770831IPR001356Homeobox domain
CDDcd000861.91E-10774821No hitNo description
PfamPF000465.5E-10780821IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MGVSPSQAKT KKGNHVFPEE NTSEQGHEIG SEYLLTELFE NNNQCGHAIT RNDSTEIATG  60
VSCSSIHKSS SEYVANGSCP QPLRLLPKGV SEHNHTDQSF SAQETVPGKT HERHSGYVHK  120
ETSEKKHQPG SEIVKIKLEE SRSWVCGLPA KHSKPFSKGL SKNAITEGLG LSPAGSKKDN  180
IRREPSKPPE QGQQLELESL PNSKEQSTTA ISTNVFNQAL QLNPEDTNKS NCDKLLQSPS  240
QGAHNVIQSG KIEDMAKNSC AEQHETTSKN FSQSKDGKTL KTIKKKYMLR SSTNNDRTLP  300
SISQEKSKPG QLSNNLVDVA SSEQGQRRKK KRREKREVVD EYSRIRGHLR YLLNRISYER  360
SLIAVYSAEG WKGQSLEKLK PEKELQRATS EILRRKLKIK DLFKRIDSLC AEGRLPESLF  420
DSEGQIDSED IFCAKCGSKD LSPNNDIILC DGACDRGFHQ YCLQPPLLKE DIPPDDEGWL  480
CPGCDCKVDC IQLLNEFQGT SFSLTDNWEK VFPEALVSED GENQDPNFRL RSDDSNDNDY  540
NPDGSETGEK GEGDESSSDE SDFTFTFEEW EVPANVDPNL GEFPSDDAVG DDADYDPNGS  600
NHDTETSRES SSSDFTFDSE DLGYMLEDDI ASQKDEDPMS NSASTVSKRR KSKCGGKESL  660
KDELLSILES TSEQDGAAVS KKRNNERLDY KRLYDEMYGN IPSGSSDDED WNDATTSRKR  720
MKCTIRATPT LSNGNACASR SEETNFNDTD LSLAEEGGVT VSGSSGKKSG STYRRLGEAV  780
KQRLNESFKE NQYPDRSTKE SLAKELDITF HQVSKWFDNA RWSFNNSSSI HESAIEKVSE  840
NEIPSALETK N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325332QRRKKKRR
2326331RRKKKR
3326332RRKKKRR
4326333RRKKKRRE
5327334RKKKRREK
6327335RKKKRREKR
7328332KKKRR
8328335KKKRREKR
9329334KKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Primarily detected in root tissue.
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6143192e-74JX614319.1 Gossypium hirsutum clone NBRI_GE57612 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016708252.10.0PREDICTED: homeobox protein HAT3.1-like
SwissprotQ049961e-130HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A1U8L0X00.0A0A1U8L0X0_GOSHI; homeobox protein HAT3.1-like
STRINGGorai.008G021500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72702543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.16e-95Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]