|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Gh_A12G0150 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
Family |
MIKC_MADS |
Protein Properties |
Length: 235aa MW: 27154.9 Da PI: 10.087 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gh_A12G0150 | genome | NAU-NBI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 89.7 | 1.5e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +iifsstgkly+y+s
Gh_A12G0150 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIIFSSTGKLYDYAS 59
8***********************************************86 PP
|
2 | K-box | 89.5 | 6.4e-30 | 81 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ +++ + +q+e+a L+++++ Lq +R+l+Ge+L+ Ls+k+Lq+Le+qLe slk +R+kK+++l+++i+el +k + +++en +L kk++
Gh_A12G0150 81 NPDSQVKFWQREAASLRQQLQYLQDYHRQLMGEELSGLSVKDLQHLENQLEGSLKGVRTKKEQILTDEIKELNHKGHLIHQENLELYKKVD 171
578999*********************************************************************************9986 PP
|
Protein Features
? help Back to Top |
|
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 6.5E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.127 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.99E-46 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.5E-27 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.58 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 235 aa
Download sequence Send
to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLIIFSS TGKLYDYASS 60 SMKSVIERYN KVKEEHHQLL NPDSQVKFWQ REAASLRQQL QYLQDYHRQL MGEELSGLSV 120 KDLQHLENQL EGSLKGVRTK KEQILTDEIK ELNHKGHLIH QENLELYKKV DLIHQQNTEL 180 QKKIYGTREA NEASRISHPN YTFNNGYDLH APVRLQLSQP QPPKNNAPAK SMKLG
|
Expression --
Description ? help
Back to Top |
Source |
Description |
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KC155665 | 0.0 | KC155665.1 Gossypium hirsutum MADS box protein MADS70 mRNA, complete cds. |