PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A12G0150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 27154.9 Da PI: 10.087 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.7 | 1.5e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +iifsstgkly+y+s Gh_A12G0150 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLIIFSSTGKLYDYAS 59 8***********************************************86 PP | |||||||
2 | K-box | 89.5 | 6.4e-30 | 81 | 171 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ + +q+e+a L+++++ Lq +R+l+Ge+L+ Ls+k+Lq+Le+qLe slk +R+kK+++l+++i+el +k + +++en +L kk++ Gh_A12G0150 81 NPDSQVKFWQREAASLRQQLQYLQDYHRQLMGEELSGLSVKDLQHLENQLEGSLKGVRTKKEQILTDEIKELNHKGHLIHQENLELYKKVD 171 578999*********************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.5E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.127 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.99E-46 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-33 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.5E-27 | 83 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.58 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLIIFSS TGKLYDYASS 60 SMKSVIERYN KVKEEHHQLL NPDSQVKFWQ REAASLRQQL QYLQDYHRQL MGEELSGLSV 120 KDLQHLENQL EGSLKGVRTK KEQILTDEIK ELNHKGHLIH QENLELYKKV DLIHQQNTEL 180 QKKIYGTREA NEASRISHPN YTFNNGYDLH APVRLQLSQP QPPKNNAPAK SMKLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-24 | 1 | 83 | 1 | 83 | MEF2C |
5f28_B | 5e-24 | 1 | 83 | 1 | 83 | MEF2C |
5f28_C | 5e-24 | 1 | 83 | 1 | 83 | MEF2C |
5f28_D | 5e-24 | 1 | 83 | 1 | 83 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC155665 | 0.0 | KC155665.1 Gossypium hirsutum MADS box protein MADS70 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016715663.1 | 1e-174 | PREDICTED: MADS-box transcription factor 23-like isoform X1 | ||||
Swissprot | Q6EP49 | 1e-102 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A2P5YXA2 | 1e-173 | A0A2P5YXA2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.008G018100.1 | 1e-171 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM530 | 24 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 1e-100 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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