PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G3282
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family STAT
Protein Properties Length: 709aa    MW: 79498.8 Da    PI: 5.544
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G3282genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT179.64.4e-562223431122
         STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfl 98 
                  ldvvlln++gqpv+k++ev+asLlya + l+vek++d+e+pLL+s+dG+ef+s drp+kl +Grasfklkis+Lsskcdnr f+ikf + kl  y+fl
  Gh_A11G3282 222 LDVVLLNTFGQPVNKELEVIASLLYAHNRLPVEKTNDEEPPLLASCDGIEFASCDRPCKLSKGRASFKLKISKLSSKCDNRQFCIKFGVSKLGGYRFL 319
                  8************************************************************************************************* PP

         STAT  99 eavskpirCisrsrntrsssltkk 122
                  e +s +irCisr+r+ r+s+ ++k
  Gh_A11G3282 320 EDFSPSIRCISRNRTPRTSTIIWK 343
                  ******************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2006.5E-75179IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498996.73E-88180IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF133855.4E-79177No hitNo description
Gene3DG3DSA:3.30.505.104.9E-6602666IPR000980SH2 domain
SuperFamilySSF555502.03E-8603678IPR000980SH2 domain
PROSITE profilePS500019.144608692IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MGQNNQITGE DDYILLKDFK VETEVDEEKG FILCFWVYIF NSNAFPSTIL KQVHAETNSS  60
PPLLVLNEKT LMIFPLTCLH NEALGPGNTD FPSEVPKVSA EIEHPQNNWI HVGYEVSSDF  120
VRLYINGEIA GELHLSSLSN DNSMPNGSRK RTLIGITGDS NLQGFIHDAK VLPSTLSIKE  180
QYVKDPPLRL SIDESSISDI EEDNGFWNIV GGKASCRRIF SLDVVLLNTF GQPVNKELEV  240
IASLLYAHNR LPVEKTNDEE PPLLASCDGI EFASCDRPCK LSKGRASFKL KISKLSSKCD  300
NRQFCIKFGV SKLGGYRFLE DFSPSIRCIS RNRTPRTSTI IWKKVSAVHP VNGSQPFGLD  360
DSSCEPKHNT VHEAKLSPTS KRVRLGEAKI SAVDQHSEEC NSLASKQNQV ENGFGSRLEA  420
RPENFEEMNT SLSDSESTGA RDSALKSVSS RGHSVPDVTI FRYCLGGLTD RSLLLKEIAT  480
TVSDEEISGF AEQVSLYSGC SHHRHQIKMA KRLIDEGTVA WNLISQNNLQ VQWESAVFEI  540
EEQFMKIASC SSRSLTQQDF ELLRKIAGCQ EYMAQENFEK MWCWLYPVAY TLSSDWVNAM  600
WNSTCPKWIE GFITKEEAEL SLQGSRGLQE PGTFILRFPT SRSWPHPDAG NLVVTYVGTD  660
YSLHHKPLSL DNVYSSGVRE KNVKVKPLQD MLLEEPELSR LGRYETPPL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, leaves, stems and flowers. {ECO:0000269|PubMed:15073273}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016730484.10.0PREDICTED: uncharacterized protein LOC107941431 isoform X1
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A1U8MY200.0A0A1U8MY20_GOSHI; uncharacterized protein LOC107941431 isoform X1
STRINGGorai.007G332400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]