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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G2872 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 481aa MW: 52683.4 Da PI: 6.8721 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 58.1 | 2.4e-18 | 103 | 189 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L+ea+ e+ ++l+rg+l++ +Weev++++ r ++ ++s +qCk+k +nl+kryk ++++++++ + s++p+f+++e Gh_A11G2872 103 EWSDAAIGCLLEAYMEKLTQLNRGNLRGRDWEEVAAAVseRCEKQSKSVEQCKNKVDNLKKRYKLERHRMSDGG-ITASHWPWFKKME 189 5*************************************777778899*************************95.55569*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.2E-21 | 101 | 191 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 3.5E-69 | 228 | 474 | IPR001048 | Aspartate/glutamate/uridylate kinase |
SuperFamily | SSF53633 | 4.71E-54 | 241 | 474 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 31.428 | 241 | 475 | IPR015963 | Uridylate kinase, bacteria |
CDD | cd04254 | 1.05E-116 | 244 | 475 | No hit | No description |
Pfam | PF00696 | 2.2E-24 | 245 | 454 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MASSVDDEFS LIDDPETNPS HHHVLHHHHS YAQVQAPPPD NHNGDDDSDS AFRGANFVNN 60 NSSNATSSDV RIEKRRDQEE INDGVLKRSK QSATTEYRKD REEWSDAAIG CLLEAYMEKL 120 TQLNRGNLRG RDWEEVAAAV SERCEKQSKS VEQCKNKVDN LKKRYKLERH RMSDGGITAS 180 HWPWFKKMEE IVGNSLPAKA VVEEEKGSAS PGTVVRQSKS RYTSAAPNPV GQMITMKSKS 240 PKWRRVVFKI SGAALACTGP PNIDPKVAML IAREVAIACR LGVEVAIVVG GRNFFCGDTW 300 VAATGLDRST AYQIGMMASV MNSILLQSLL EKMGVQACVQ TAFSVQEAEP YSRVRAIRHL 360 EKGRVVIFGG IGAGTGNPLF STDTAAALRA SEIHAEAVVK GTNVDGVYDC HSQDNNATFE 420 HISFRDLVSR GATTMDMMSL TFCEENGIPV VVFNLLQPGN ISKALCGDQV GTLIDQTGRI 480 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3nwy_A | 1e-55 | 227 | 474 | 34 | 279 | Uridylate kinase |
3nwy_B | 1e-55 | 227 | 474 | 34 | 279 | Uridylate kinase |
3nwy_C | 1e-55 | 227 | 474 | 34 | 279 | Uridylate kinase |
3nwy_D | 1e-55 | 227 | 474 | 34 | 279 | Uridylate kinase |
3nwy_E | 1e-55 | 227 | 474 | 34 | 279 | Uridylate kinase |
3nwy_F | 1e-55 | 227 | 474 | 34 | 279 | Uridylate kinase |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.20129 | 0.0 | boll| ovule |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ394973 | 7e-48 | GQ394973.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1996 SSR marker DPL0376 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017627686.1 | 0.0 | PREDICTED: uncharacterized protein LOC108470751 isoform X1 | ||||
TrEMBL | A0A218KFA9 | 0.0 | A0A218KFA9_GOSHI; Trihelix transcription factor | ||||
STRING | Gorai.007G371500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9305 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 0.0 | Trihelix family protein |