PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G2870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 304aa MW: 32882.6 Da PI: 4.4846 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 279 | 300 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cg+sF + L++H + H Gh_A11G2870 279 CKSCGRSFGSENALQSHSKAkH 300 *****************88777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.1E-5 | 270 | 299 | No hit | No description |
PROSITE profile | PS50157 | 10.887 | 277 | 300 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 279 | 300 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MEFWGAEVKS GQSFEVELED DGSRILHISQ AALGEVTSDN KKEKGNGTAC IYLKFNNEKF 60 VIGTLSHDKF PQMPLDLALH SKFELSHTWK NGSVYFTGYY VDTPQGSGSE SEEELLEPIV 120 NPVKPHSTAS DPTTSKQVKI VEPKKAEDSS DDEDEDDTST EDEMSSEDQE PGMLVNGENE 180 SNNDTDSDED DSEEESSDED PETPETEKAG PSKKRSAESA TKTPAPEKKA KLVTPQKTDG 240 KKVGGHTATP HPSKQARKAL ATTGQVNQSP KPGGSSFLCK SCGRSFGSEN ALQSHSKAKH 300 GTAV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.10108 | 0.0 | boll| ovule| root| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017630739.1 | 0.0 | PREDICTED: histone deacetylase HDT1-like isoform X1 | ||||
TrEMBL | A0A0D2PKC3 | 1e-178 | A0A0D2PKC3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.007G371300.1 | 1e-179 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2027 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 1e-26 | histone deacetylase 2C |