PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A11G2726 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 248aa MW: 28067.4 Da PI: 8.6181 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell +++++ G g+W+t +++ g+ R++k+c++rw +yl Gh_A11G2726 25 RGPWTPEEDELLSNYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 72 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4e-15 | 83 | 123 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Gh_A11G2726 83 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123 89***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 16 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.553 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.56E-29 | 22 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-13 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 25 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.71E-11 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 24.397 | 73 | 127 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-24 | 75 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-14 | 83 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.75E-11 | 83 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MRNPTKKDNV GTKTTPCCSK VGLKRGPWTP EEDELLSNYI NKEGEGRWRT LPKRAGLLRC 60 GKSCRLRWMN YLRPSVKRGQ IAPDEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN 120 THLSKKLISQ GIDPRTHKPL NPQQLSPSPP SLKPSPSSSS SMAKPNNPPS PLPVHVVNAN 180 KQNDYDDGSN EDHQGMIMNN DHYQQQQDHD DDVFSSFLNS LINEDDDALV SNLGLSQGWE 240 STPFDQPK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-25 | 23 | 127 | 5 | 108 | B-MYB |
1h8a_C | 1e-24 | 23 | 127 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.8076 | 1e-168 | boll| leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF336278 | 0.0 | AF336278.1 Gossypium hirsutum BNLGHi233 (bnlghi6233) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017627407.1 | 0.0 | PREDICTED: transcription repressor MYB5-like | ||||
Swissprot | Q38850 | 5e-88 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A2P5RBQ2 | 0.0 | A0A2P5RBQ2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G350500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13540.1 | 6e-80 | myb domain protein 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|