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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G2521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25654.8 Da PI: 10.4071 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.4 | 3.9e-13 | 73 | 113 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s r++t+ kR +g+ KK EL +LC++e+ +i s++ Gh_A11G2521 73 ITNDSARKTTYKKRTKGLVKKVRELTTLCGIEAFAVINSPD 113 89*******************************99999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-14 | 63 | 123 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.269 | 63 | 111 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-19 | 65 | 157 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-6 | 65 | 85 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.78E-21 | 65 | 148 | No hit | No description |
Pfam | PF00319 | 7.3E-14 | 73 | 113 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.5E-6 | 85 | 100 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSTNLISLVP VLKKWNEKVY GHIATRKHSL GRRIDNVQAA LDPIMVMNLV SSLDIKHLSS 60 PFLFRKKTKL AYITNDSARK TTYKKRTKGL VKKVRELTTL CGIEAFAVIN SPDFGSQAEV 120 WPSLEDARRL LSEFKKLPLS KQNNKMVNQE SFLEQSLVKA TQQLWKLSEE NRQKELEEVM 180 FESLSGKGIL QSLNAMDLDE VGRLVKQNLT DIDDRIRVLT KASHS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.12596 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243101 | 8e-80 | AC243101.1 Gossypium arboreum clone GM203N05-jhe, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635023.1 | 1e-111 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 2e-39 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A2P5YTP1 | 1e-110 | A0A2P5YTP1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.013G210300.1 | 3e-96 | (Gossypium raimondii) | ||||
STRING | Gorai.013G210600.1 | 3e-96 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 9e-42 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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