PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G2413
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 131aa    MW: 14776.1 Da    PI: 9.7811
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G2413genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB138.22.2e-43494393
        NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93
                 eqd +lPianv+rimk++lP  +k+sk+aket+qecv+efisfvts+asdkc++e rkti gdd++ al+ +G+++y+e++  +l+kyr +
  Gh_A11G2413  4 EQDPLLPIANVGRIMKRILPPTGKVSKEAKETMQECVTEFISFVTSDASDKCRKESRKTIYGDDICRALGAVGLDNYAEAIVRHLHKYRVA 94
                 89***************************************************************************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.7E-423112IPR009072Histone-fold
SuperFamilySSF471131.29E-335105IPR009072Histone-fold
PfamPF008086.1E-25972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.6E-123654No hitNo description
PRINTSPR006152.6E-125573No hitNo description
PRINTSPR006152.6E-127492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MGDEQDPLLP IANVGRIMKR ILPPTGKVSK EAKETMQECV TEFISFVTSD ASDKCRKESR  60
KTIYGDDICR ALGAVGLDNY AEAIVRHLHK YRVAALNQHK ATTSSFEDKM KNRIEVASHL  120
IKRMKLQLNK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-36492391Transcription factor HapC (Eurofung)
4g92_B1e-36492391Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, siliques and young rosettes. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016686409.11e-94PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO040279e-43NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
SwissprotO822482e-42NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A1U8JDT53e-93A0A1U8JDT5_GOSHI; nuclear transcription factor Y subunit B-4-like
STRINGGorai.007G298300.13e-66(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.14e-45nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]