PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Gh_A11G2386

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 314aa MW: 34895 Da PI: 6.4044

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G2386	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41	3.5e-13	113	164	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i A++++k+L+ Gh_A11G2386 113 QRMTHIAVERNRRRQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 164 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.72E-11	111	165	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.8E-14	111	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-16	112	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.459	112	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-10	113	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-9	118	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MALEAVVFQQ DLFGYNSKDL YSLLGGNLSY EDIHFPHHNQ TSDEANNNFV NGGDSYWVSS 60 SSSPTSMAPP PPPDEATNNN VNGSSSSALD TSTSRPKRRR LKTRKNKEEI ENQRMTHIAV 120 ERNRRRQMNE YLSVLRSLMP ESYVQRGDQA SIIGGAINFV KELEHCVQLL SAKKETKERP 180 NGSNSGCSSP FCEFFTFPQY STSSTRGDNN SIPMNESMVE TRSAIADIEV TMVESHANLK 240 IRSKKGPAQL LKLVSGLNSM RLNILHLNVT TVDQTVLYSL SVKVEDDCKL TSVDDIATAV 300 NQLLGRIQEE AVLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	100	KRRRL
2	113	124	RMTHIAVERNRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.14366	0.0	stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ261233	3e-34	GQ261233.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI018 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016667464.1	0.0	PREDICTED: transcription factor bHLH94-like
Swissprot	Q9SK91	2e-83	BH094_ARATH; Transcription factor bHLH94
TrEMBL	A0A2P5Y566	0.0	A0A2P5Y566_GOSBA; Uncharacterized protein
STRING	Gorai.007G294800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1116	27	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22490.1	7e-83	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]