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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G2296 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Trihelix | ||||||||
Protein Properties | Length: 682aa MW: 77180.7 Da PI: 6.5466 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 46.2 | 1.2e-14 | 128 | 189 | 2 | 68 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 W+++evlaL+++r+++e+++ + We+vs+k+++ gf+rs+ +Ckek+e+ ++++ i+ ++ Gh_A11G2296 128 WSNDEVLALLKVRSSIENWFPEF-----TWEHVSRKLADLGFKRSADKCKEKFEEESRYFNSINCSK 189 ********************998.....9*******************************9988665 PP | |||||||
2 | trihelix | 95.9 | 3.8e-30 | 528 | 616 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk....lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ ++ +k k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql Gh_A11G2296 528 RWPRDEVLALINLRCSLYNNGDHEKegtaIKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDINKKR-SLDSRTCPYFHQLS 616 8**************9998888653344499*******************************************8.9999********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 17 | 124 | 181 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 7.9E-10 | 126 | 189 | No hit | No description |
PROSITE profile | PS50090 | 6.133 | 127 | 179 | IPR017877 | Myb-like domain |
SuperFamily | SSF101447 | 3.66E-6 | 209 | 217 | No hit | No description |
SMART | SM00717 | 0.24 | 525 | 591 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 7.5E-19 | 527 | 616 | No hit | No description |
CDD | cd12203 | 4.70E-25 | 527 | 596 | No hit | No description |
PROSITE profile | PS50090 | 6.539 | 528 | 589 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MFDGVPDHLH QFIGASSASA RTTTTTTLLL PLSFTSSNGF TSFDPLFTSS SNSHHQQVPP 60 QLHHHHHQQQ QQQQQQQQQP QLLQSLHQQK NNEESTTSLV GMNMEINGRD QRSIAEPIDN 120 LHHHHHPWSN DEVLALLKVR SSIENWFPEF TWEHVSRKLA DLGFKRSADK CKEKFEEESR 180 YFNSINCSKN YRIFSELEEL YQAENPPPPP PPPPPPPPPH HHSQQQQVAV VADENNKNVE 240 KSREDEDNMG QNLEADSRNI DELYQTSPAN NTAMSSDQDN KKVVENKANY DDNKAAAAAN 300 NNKKRKRVKK LELFKGFCED IVNKLMIQQE EMHNKLIEDM VKRDEEKVAR EEAWKKQELD 360 RINQELELRA KEQAIAGDRQ ATIIKFLSKF SQTGSSKKQC FGRVNEDVVK VPSECSNPPI 420 ASSSPLVAVA ENPNPIVTDQ NKVDQVSTTS PSSMNLAHQN KQSMPISMTE SQAPQNPNPE 480 TPDTSSLAPQ NPNSVSAESN PLPPTSPLTV NKAPQNPTSN EKEDLGKRWP RDEVLALINL 540 RCSLYNNGDH EKEGTAIKAP LWERISQGML ELGYKRSAKR CKEKWENINK YFRKTKDINK 600 KRSLDSRTCP YFHQLSTLYS QGTLIAPSDG PENRSPLPEN HSKLPETGKD SCQRGDKDST 660 VHVSGGNETN MVIQVPGFEF EF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 302 | 309 | KKRKRVKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.14681 | 0.0 | boll |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX964202 | 1e-152 | JX964202.1 Gossypium hirsutum clone NBRI_TRANS-471 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017630950.1 | 0.0 | PREDICTED: trihelix transcription factor GTL2 | ||||
TrEMBL | A0A2P5Y837 | 0.0 | A0A2P5Y837_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G283800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8268 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 1e-105 | Trihelix family protein |