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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A11G1855 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
HD-ZIP |
| Protein Properties |
Length: 292aa MW: 33370.2 Da PI: 5.4859 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A11G1855 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.2 | 1.4e-18 | 52 | 105 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ +q+++Le+ Fe +++++ ++ +LA++lgL rqV vWFqNrRa++k
Gh_A11G1855 52 KKRRLNVDQVKALEKDFEVENKLDPGRKLKLAQQLGLRPRQVAVWFQNRRARWK 105
5568999**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 123.6 | 9.6e-40 | 51 | 143 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+ +qvk+LE+ Fe e+kL+p rK +la++Lgl+prqvavWFqnrRAR+ktkqlEkdy Lk++y++lk + ++L+++++ L ++++e
Gh_A11G1855 51 EKKRRLNVDQVKALEKDFEVENKLDPGRKLKLAQQLGLRPRQVAVWFQNRRARWKTKQLEKDYGLLKNRYETLKLNYDNLQHDNQVLLKQIEE 143
69*************************************************************************************999986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 292 aa
Download sequence Send
to blast |
MKRVGSSHSL GAMMSICPIS DDNQIYSREF QSILDGLDEE EGVEESGYVA EKKRRLNVDQ 60
VKALEKDFEV ENKLDPGRKL KLAQQLGLRP RQVAVWFQNR RARWKTKQLE KDYGLLKNRY 120
ETLKLNYDNL QHDNQVLLKQ IEEVKAKLNG KDNVSVKEEV NVTKTANRTL EQSEAPVEVK 180
YESLKNNLFL DLKDGSSDSD SSAVLNEDNN NGSNYVGVSS SGVLQSQHVW MSPTTAPSHN 240
FNSSSSSSMK CFQPQQFVKM EEKNFFSADE ACKFFSDEEA PSLHWYCPEH WN
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 99 | 107 | RRARWKTKQ |
