PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1833
Common NameCBF20, DREB1C
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 351aa    MW: 39240.6 Da    PI: 6.1766
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1833genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.3e-20150200256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae Aa a+++a+ kl+ge
  Gh_A11G1833 150 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEAAALAYDKAAYKLRGE 200
                  59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.41E-23149209No hitNo description
Gene3DG3DSA:3.30.730.105.4E-32150208IPR001471AP2/ERF domain
PROSITE profilePS5103223.261150207IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-23150208IPR016177DNA-binding domain
SMARTSM003801.2E-37150213IPR001471AP2/ERF domain
PRINTSPR003671.0E-10151162IPR001471AP2/ERF domain
PfamPF008471.3E-13151200IPR001471AP2/ERF domain
PRINTSPR003671.0E-10173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MAAAIDMYNS NSNSSVFSDP FSAELMKALE PFMKSASSTS PLSSSSSYSQ SNLYPEFCSP  60
WRTHLCSEQG FCNYQNLMGF EQTGSIGLNQ LTPSQILQIQ AQIYQQQQQQ QEVASKSTTA  120
SLKNQRFNFL SPKAVPMKHV SSTPPKPTKL YRGVRQRHWG KWVAEIRLPK NRTRLWLGTF  180
DTAEAAALAY DKAAYKLRGE FARLNFPHLK HQGAHISGEF GDYKPLHSAV DAKLQAICQS  240
LQKQENSGKA CSVPDSNPKV EFDYPVKREE FDQSPRFASP KVEMNSLSSS SSSPSSPDLS  300
DESLAGSSSP ESDITFFDFS DSKWDDNEIF GLEKYPSVEI DWEAIRELSE S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21149207160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.151230.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8480940.0GQ848094.1 Gossypium hirsutum DREB1C (DREB1C) mRNA, complete cds.
GenBankKP7802030.0KP780203.1 Gossypium hirsutum C-repeat binding factor 20 (CBF20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313783.10.0ethylene-responsive transcription factor ERF060-like
TrEMBLA0A1U8ILU90.0A0A1U8ILU9_GOSHI; ethylene-responsive transcription factor ERF060-like
STRINGGorai.007G240700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.12e-71ERF family protein