![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A11G1749 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 557aa MW: 63492.8 Da PI: 9.2393 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.4 | 3.9e-16 | 19 | 110 | 2 | 100 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 fkv +++ + g l +p kfa+++g+k s + ++ ++g++We++l k +g+ + ++GW++F + L+ g f+vF+++++ +f +v +f++ Gh_A11G1749 19 FKVI-LESTIRDGKLGIPHKFAKDYGSK--LSSPVFFQVPNGEVWELEL--MKLDGKLWVQNGWRKFTEHYSLELGHFLVFRYQRNCRF--HVLIFDR 109 5555.356677788***********988..5557***************..********************************999999..*****98 PP S CS B3 100 s 100 s Gh_A11G1749 110 S 110 5 PP | |||||||
2 | B3 | 49.4 | 8.5e-16 | 186 | 262 | 13 | 86 |
T...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 13 s...grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.....yvltkGWkeFvkangLkegDfvvFkldg 86 + ++l++pk+f +++ +++ + +++l d+sg++W+ +++ + + l +GW Fv++n+L++gD++ F+l++ Gh_A11G1749 186 HskvSCLSIPKEFSRKYLMDH-G--DVILCDSSGNTWSAQYRAtlG----MngqpyVKLLNGWDAFVRDNNLQVGDVCAFELTD 262 4445669**********6663.3..6***************66541....22245577889********************864 PP | |||||||
3 | B3 | 58.1 | 1.6e-18 | 333 | 430 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+ vl ps+v +++ l+++++f+++h + + +++ + l+ ++g+sW ++ +s + + +GW+ Fv++n+Lk+gD++vF+l+++ + +++v Gh_A11G1749 333 FVVVLRPSYVQSHA-LCISNDFTRKHFKTTLTNVGIALRLSNGKSWPAEYHQ--RSIGnpnARICNGWRAFVNDNKLKVGDVCVFELESDAQISFKVI 427 67788888888887.***********888899999***************33..333334677889*********************98877777777 PP EE- CS B3 96 vfr 98 +f+ Gh_A11G1749 428 IFQ 430 775 PP | |||||||
4 | B3 | 40.4 | 5.3e-13 | 469 | 551 | 9 | 95 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + k++++ +p +f+e++ +++ ++ l+l + r+W v+++ + + + lt+GW +F+++n L+egD++v +ld ++ l+v+ Gh_A11G1749 469 HL-KEDCVDIPFRFVEQYFEPNVQK--LIL-QVADRTWPVEITSNPRIRIAKLTSGWIKFARENSLREGDICVYELDTVNNNLLKVS 551 44.45559**********7675564..554.4477*******77777777*************************987666556665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-24 | 11 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-23 | 12 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.25E-18 | 17 | 108 | No hit | No description |
PROSITE profile | PS50863 | 13.704 | 17 | 110 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-13 | 18 | 109 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-18 | 18 | 110 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-20 | 166 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-21 | 169 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.69E-19 | 172 | 274 | No hit | No description |
SMART | SM01019 | 5.0E-7 | 174 | 276 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.493 | 177 | 276 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-13 | 189 | 262 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-24 | 326 | 430 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-22 | 326 | 430 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.26E-19 | 331 | 429 | No hit | No description |
PROSITE profile | PS50863 | 13.394 | 332 | 432 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-16 | 333 | 430 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-13 | 333 | 432 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-16 | 456 | 553 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.47E-13 | 459 | 550 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.956 | 460 | 556 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.65E-14 | 460 | 554 | No hit | No description |
SMART | SM01019 | 7.4E-10 | 461 | 556 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-10 | 469 | 551 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 557 aa Download sequence Send to blast |
MTSHHGRVDG YSPEPYHFFK VILESTIRDG KLGIPHKFAK DYGSKLSSPV FFQVPNGEVW 60 ELELMKLDGK LWVQNGWRKF TEHYSLELGH FLVFRYQRNC RFHVLIFDRS ASEIHYPYAN 120 NISTDMTKKP VLQCPRPPKI MRASNNGFSA TKGNEKSKAL ERASSAFKSG NPFFLVFMQP 180 TYVGLHSKVS CLSIPKEFSR KYLMDHGDVI LCDSSGNTWS AQYRATLGMN GQPYVKLLNG 240 WDAFVRDNNL QVGDVCAFEL TDCIDISFQV FIYRSKKADF HGSPAQMEAG ITLTRSECLR 300 PVKARETAFH REMKVREKAL QRALAFTSEN PFFVVVLRPS YVQSHALCIS NDFTRKHFKT 360 TLTNVGIALR LSNGKSWPAE YHQRSIGNPN ARICNGWRAF VNDNKLKVGD VCVFELESDA 420 QISFKVIIFQ AIADEDTHPL QGVSEEALGL TSQSAKAPLI FRRVVLPLHL KEDCVDIPFR 480 FVEQYFEPNV QKLILQVADR TWPVEITSNP RIRIAKLTSG WIKFARENSL REGDICVYEL 540 DTVNNNLLKV SISKYAS |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635635.1 | 0.0 | PREDICTED: B3 domain-containing protein LOC_Os12g40080-like | ||||
TrEMBL | A0A2P5SLU3 | 0.0 | A0A2P5SLU3_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G209200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18343 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-24 | B3 family protein |