PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G1749
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 557aa    MW: 63492.8 Da    PI: 9.2393
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G1749genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.43.9e-16191102100
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  fkv   +++ + g l +p kfa+++g+k   s  + ++ ++g++We++l   k +g+ + ++GW++F +   L+ g f+vF+++++ +f  +v +f++
  Gh_A11G1749  19 FKVI-LESTIRDGKLGIPHKFAKDYGSK--LSSPVFFQVPNGEVWELEL--MKLDGKLWVQNGWRKFTEHYSLELGHFLVFRYQRNCRF--HVLIFDR 109
                  5555.356677788***********988..5557***************..********************************999999..*****98 PP

                  S CS
           B3 100 s 100
                  s
  Gh_A11G1749 110 S 110
                  5 PP

2B349.48.5e-161862621386
                  T...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.....EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
           B3  13 s...grlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.....yvltkGWkeFvkangLkegDfvvFkldg 86 
                  +   ++l++pk+f +++ +++ +  +++l d+sg++W+ +++        +     + l +GW  Fv++n+L++gD++ F+l++
  Gh_A11G1749 186 HskvSCLSIPKEFSRKYLMDH-G--DVILCDSSGNTWSAQYRAtlG----MngqpyVKLLNGWDAFVRDNNLQVGDVCAFELTD 262
                  4445669**********6663.3..6***************66541....22245577889********************864 PP

3B358.11.6e-18333430198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f+ vl ps+v +++ l+++++f+++h + + +++ + l+ ++g+sW  ++    +s +     + +GW+ Fv++n+Lk+gD++vF+l+++ + +++v 
  Gh_A11G1749 333 FVVVLRPSYVQSHA-LCISNDFTRKHFKTTLTNVGIALRLSNGKSWPAEYHQ--RSIGnpnARICNGWRAFVNDNKLKVGDVCVFELESDAQISFKVI 427
                  67788888888887.***********888899999***************33..333334677889*********************98877777777 PP

                  EE- CS
           B3  96 vfr 98 
                  +f+
  Gh_A11G1749 428 IFQ 430
                  775 PP

4B340.45.3e-13469551995
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  +  k++++ +p +f+e++ +++ ++  l+l +   r+W v+++ + + +   lt+GW +F+++n L+egD++v +ld  ++  l+v+
  Gh_A11G1749 469 HL-KEDCVDIPFRFVEQYFEPNVQK--LIL-QVADRTWPVEITSNPRIRIAKLTSGWIKFARENSLREGDICVYELDTVNNNLLKVS 551
                  44.45559**********7675564..554.4477*******77777777*************************987666556665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-2411110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-2312110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-1817108No hitNo description
PROSITE profilePS5086313.70417110IPR003340B3 DNA binding domain
PfamPF023622.8E-1318109IPR003340B3 DNA binding domain
SMARTSM010191.3E-1818110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.2E-20166276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-21169275IPR015300DNA-binding pseudobarrel domain
CDDcd100176.69E-19172274No hitNo description
SMARTSM010195.0E-7174276IPR003340B3 DNA binding domain
PROSITE profilePS5086313.493177276IPR003340B3 DNA binding domain
PfamPF023621.5E-13189262IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-24326430IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-22326430IPR015300DNA-binding pseudobarrel domain
CDDcd100172.26E-19331429No hitNo description
PROSITE profilePS5086313.394332432IPR003340B3 DNA binding domain
PfamPF023621.5E-16333430IPR003340B3 DNA binding domain
SMARTSM010194.0E-13333432IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-16456553IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-13459550IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.956460556IPR003340B3 DNA binding domain
CDDcd100173.65E-14460554No hitNo description
SMARTSM010197.4E-10461556IPR003340B3 DNA binding domain
PfamPF023621.9E-10469551IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MTSHHGRVDG YSPEPYHFFK VILESTIRDG KLGIPHKFAK DYGSKLSSPV FFQVPNGEVW  60
ELELMKLDGK LWVQNGWRKF TEHYSLELGH FLVFRYQRNC RFHVLIFDRS ASEIHYPYAN  120
NISTDMTKKP VLQCPRPPKI MRASNNGFSA TKGNEKSKAL ERASSAFKSG NPFFLVFMQP  180
TYVGLHSKVS CLSIPKEFSR KYLMDHGDVI LCDSSGNTWS AQYRATLGMN GQPYVKLLNG  240
WDAFVRDNNL QVGDVCAFEL TDCIDISFQV FIYRSKKADF HGSPAQMEAG ITLTRSECLR  300
PVKARETAFH REMKVREKAL QRALAFTSEN PFFVVVLRPS YVQSHALCIS NDFTRKHFKT  360
TLTNVGIALR LSNGKSWPAE YHQRSIGNPN ARICNGWRAF VNDNKLKVGD VCVFELESDA  420
QISFKVIIFQ AIADEDTHPL QGVSEEALGL TSQSAKAPLI FRRVVLPLHL KEDCVDIPFR  480
FVEQYFEPNV QKLILQVADR TWPVEITSNP RIRIAKLTSG WIKFARENSL REGDICVYEL  540
DTVNNNLLKV SISKYAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635635.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A2P5SLU30.0A0A2P5SLU3_GOSBA; Uncharacterized protein
STRINGGorai.007G209200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1834349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-24B3 family protein