PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A11G1730

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 817aa MW: 88867.6 Da PI: 6.9812

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G1730	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	2.9e-09	599	636	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Gh_A11G1730 599 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 636 664459******************************88 PP
2	BELL	92.1	5.3e-30	477	530	19	72
BELL 19 VdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 V++rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ Gh_A11G1730 477 VERRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQL 530 99*************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.8E-74	374	528	IPR006563	POX domain
Pfam	PF07526	5.2E-49	379	527	IPR006563	POX domain
PROSITE profile	PS50071	12.568	577	640	IPR001356	Homeobox domain
CDD	cd00086	8.10E-13	580	641	No hit	No description
SMART	SM00389	1.2E-9	580	644	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.23E-17	582	647	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-28	583	646	IPR009057	Homeodomain-like
Pfam	PF05920	4.2E-18	597	636	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence Send to blast
MGIATPPLVA SILSQESQPS KKIHHQIPIQ HKSNNSTNSM SQDYHQAAGI FSFSNGFERS 60 AVSHQEHQKQ QQQHLEQQIR RDKLRVEGFE PPPPPLVGIE EEESTSLPVY ETAGMLSEMF 120 NFPSGAAAAA AAATASAELL DQHVQPNYRA HRPVQGNTNE WYSNRQGVVG GLGQLGESKS 180 HITRDSLAQQ HQQQQQLPSI NADSAAAMHL FLMNPQQRSP SPPPPPPATS SNTLHMLLPN 240 PSTSLQGFNV SGPGGGFGTS TVLSPPQFTW VPGSAHEGGN NTDSQLSSQN EIGSVVEGQG 300 LSLSLSSSLQ HLEAAKAEEL RMGDGGLLYY NQGGGSAAQF HQYRNLGSHH QTMHLQGGVG 360 QNQQVHHVGF GSSLGMVNVL RNSKYVKAAQ ELLEEFCSVG RGQFKKNKFG RNNTNPSSDP 420 VSSGCAGGGG SSSSTKDLPP LSAADRIEHQ RRKVKLLSML DEACNLFLYS PIFSFIVERR 480 YNHYCEQMQM VVNSFDLVMG FGAAVPYTAL AQKAMSRHFR CLKDAISAQL KHSCEMLGEK 540 DGAGSSGITK GETPRLRMLE QSLRQQRAFN QMGMMEQEAW RPQRGLPERS VNILRAWLFE 600 HFLHPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP MVEEMYQQET KEEGDHNNNN 660 NNNHTERERN PNNNNNAQTS TPSTTAAPTT TTTTSVGKGS QINATENDPS LIAINTPQCF 720 SENQANPTAT EVAPPISQPF TTTIPHDSDI HHQRIAGTTV AAADYGTTAG GNTDIGSSLI 780 RLGTTTAGDV SLTLGLRQAG NMPENTSSFS VRDFGGC

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence Send to blast

MGIATPPLVA SILSQESQPS KKIHHQIPIQ HKSNNSTNSM SQDYHQAAGI FSFSNGFERS  60
AVSHQEHQKQ QQQHLEQQIR RDKLRVEGFE PPPPPLVGIE EEESTSLPVY ETAGMLSEMF  120
NFPSGAAAAA AAATASAELL DQHVQPNYRA HRPVQGNTNE WYSNRQGVVG GLGQLGESKS  180
HITRDSLAQQ HQQQQQLPSI NADSAAAMHL FLMNPQQRSP SPPPPPPATS SNTLHMLLPN  240
PSTSLQGFNV SGPGGGFGTS TVLSPPQFTW VPGSAHEGGN NTDSQLSSQN EIGSVVEGQG  300
LSLSLSSSLQ HLEAAKAEEL RMGDGGLLYY NQGGGSAAQF HQYRNLGSHH QTMHLQGGVG  360
QNQQVHHVGF GSSLGMVNVL RNSKYVKAAQ ELLEEFCSVG RGQFKKNKFG RNNTNPSSDP  420
VSSGCAGGGG SSSSTKDLPP LSAADRIEHQ RRKVKLLSML DEACNLFLYS PIFSFIVERR  480
YNHYCEQMQM VVNSFDLVMG FGAAVPYTAL AQKAMSRHFR CLKDAISAQL KHSCEMLGEK  540
DGAGSSGITK GETPRLRMLE QSLRQQRAFN QMGMMEQEAW RPQRGLPERS VNILRAWLFE  600
HFLHPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP MVEEMYQQET KEEGDHNNNN  660
NNNHTERERN PNNNNNAQTS TPSTTAAPTT TTTTSVGKGS QINATENDPS LIAINTPQCF  720
SENQANPTAT EVAPPISQPF TTTIPHDSDI HHQRIAGTTV AAADYGTTAG GNTDIGSSLI  780
RLGTTTAGDV SLTLGLRQAG NMPENTSSFS VRDFGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	586	644	5	63	Homeobox protein Meis2
3k2a_B	2e-16	586	644	5	63	Homeobox protein Meis2
4xrm_A	2e-16	586	644	5	63	Homeobox protein Meis2
4xrm_B	2e-16	586	644	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016697058.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_016697059.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
TrEMBL	A0A1U8K8U1	0.0	A0A1U8K8U1_GOSHI; BEL1-like homeodomain protein 4
STRING	Gorai.007G207200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-161	BEL1-like homeodomain 2