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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G1715 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 486aa MW: 51149.6 Da PI: 8.2182 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.4e-05 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Gh_A11G1715 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.3 | 0.0011 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Gh_A11G1715 137 WKCDKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP | |||||||
3 | zf-C2H2 | 11.6 | 0.00083 | 167 | 185 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Gh_A11G1715 167 DCGTVFSRRDSFITHRAFC 185 9**************8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.18E-6 | 60 | 83 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 60 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.017 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 61 | 83 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 7.7E-5 | 61 | 83 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.1E-4 | 125 | 158 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.18E-6 | 132 | 157 | No hit | No description |
SMART | SM00355 | 150 | 137 | 157 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MPVDLDNSST ASGEASVTSS GNQNPLPKST AKKKRNLPGM PDPDAEVIAL SPSTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLK QRSSKEVKKR VYVCPEITCV HHHPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG TREYKCDCGT VFSRRDSFIT 180 HRAFCDVLAE ERAKAQTQPQ PQNQNQTATK ESNPKPQTTD SSPPSAATPI SVSAPESGKV 240 PAPAPAVPQL SSVISSSALP IQSSELPENP SPIMEESLAP APAAAPTGLN GSCSSSASLG 300 QPDCLTDLAP SPSIEPISLC LSTNHGSSIF GTAGQEHRQY APPPQPAMSA TALLQKAAQM 360 GATATNASLL HGFGIASLSS LSAQQDNLQW GQREVEPENT SVVAGLGPGL PRDGSSGLKE 420 LMMGTPVFGP RQATLDFLGL GMAAGGSPNG GLSALITSIG DELDVVAAAT SFGGGDFTSK 480 DIGRSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-33 | 133 | 197 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 6e-33 | 133 | 197 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.4228 | 0.0 | boll| ovule| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}. | |||||
Uniprot | TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ908309 | 1e-154 | DQ908309.1 Gossypium hirsutum clone LIB5327-031-A1-N1-D7_Gh370 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016677049.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like isoform X1 | ||||
Swissprot | Q9LVQ7 | 1e-179 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A1U8IMK2 | 0.0 | A0A1U8IMK2_GOSHI; protein indeterminate-domain 2-like isoform X1 | ||||
STRING | Gorai.007G205300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-165 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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