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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G1370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CO-like | ||||||||
Protein Properties | Length: 413aa MW: 44983.8 Da PI: 4.826 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19 | 2.9e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ Gh_A11G1370 4 ICDFCGDQPSLVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 7*****************************65677777765 PP | |||||||
2 | zf-B_box | 20.4 | 1.1e-06 | 46 | 89 | 4 | 41 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C++++++++ C + ++ lC++C +H H++++ Gh_A11G1370 46 LLCERCNSQPAFVRCAEEKVSLCQNCDWMGHDAstsnstHKRQT 89 57*****************************4477788888766 PP | |||||||
3 | CCT | 62.9 | 9.7e-22 | 356 | 399 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ Gh_A11G1370 356 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 399 889**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.271 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.21E-8 | 4 | 47 | No hit | No description |
SMART | SM00336 | 2.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.816 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.97E-4 | 47 | 90 | No hit | No description |
SMART | SM00336 | 1.1 | 48 | 90 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 2.0E-16 | 356 | 398 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.418 | 356 | 398 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MGYICDFCGD QPSLVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC 60 AEEKVSLCQN CDWMGHDAST SNSTHKRQTI NSYSGCPSSG ELSSIWSFFS QPDSAGESAC 120 EQELGLMSIS ENIESTSWDP TVNTISHNSA VVVEVNDDCN VDKGSGWTRT SIPEHRPAPQ 180 LLDQPAGSTY TSLPKFCPQT KYPGLSEDDL YDDFNIDEVD LNLENYEELF GVTLNHSEEL 240 LENGGIDSLF GTKDMSAADS TCQGAVAAEG SSIGLVNAIQ PACSNAASAD SVMSNKTDSI 300 LCFTTKHAHS SLSFSGLTGE SSAGDYQDCG ASSMLLMGEP PWCPPCTESS IPSATRSDAV 360 MRYKEKKKTR KFEKRVRYAS RKARADVRKR VKGRFVKAGD AYDYDPLNQT RSC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016710287.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Refseq | XP_016710288.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
Swissprot | Q9SSE5 | 1e-149 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A1U8LA83 | 0.0 | A0A1U8LA83_GOSHI; zinc finger protein CONSTANS-LIKE 9-like isoform X1 | ||||
STRING | Gorai.007G164600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-124 | B-box type zinc finger protein with CCT domain |