PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G1012

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 197aa MW: 21669.5 Da PI: 9.2904

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G1012	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.4e-05	47	69	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F ++ L H++ H Gh_A11G1012 47 FECPFCHRVFANSQALGGHQNAH 69 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.35E-6	44	74	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-4	45	73	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.51	47	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	49	69	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MADCSIPARS SSPDKPSSSL KLFGFSLTDQ PDEVLEKAEG FGESRKFECP FCHRVFANSQ 60 ALGGHQNAHK RERQKARRAQ FHSQQRLIAS APVLSSHSLR PTFPRGFTGN AAAKIVSQPF 120 YCPSRPLLLP STPTQYPPRI YVAQPLHFAT AAPALTDFSD QLPEADIGLD LHLKLSPSAE 180 IKNVKGDNMT KEASFQH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016709261.1	1e-127	PREDICTED: zinc finger protein 6-like
TrEMBL	A0A0D2P7W1	1e-126	A0A0D2P7W1_GOSRA; Uncharacterized protein
STRING	Gorai.007G124800.1	1e-127	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15854	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	2e-12	C2H2 family protein