PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0954
Common NameWRKY51
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 506aa    MW: 54604.7 Da    PI: 8.5456
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0954genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.49.2e-31270328259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK  kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Gh_A11G0954 270 SDGCQWRKYGQKLAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKSILITTYEGNHNHP 328
                  7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-32254330IPR003657WRKY domain
SuperFamilySSF1182909.15E-28263330IPR003657WRKY domain
PROSITE profilePS5081129.918264330IPR003657WRKY domain
SMARTSM007741.2E-36269329IPR003657WRKY domain
PfamPF031065.8E-27271328IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEKQLRRELR FLHSGDCPTQ DSGEPDGALD DSGDHVKPLI KEMDFFPNHN QSHDCHQGRK  60
IDNNNNSPLS SLLDSDVNIG LNLLSSSSGV SRIANEEKPK AEISHVKIAL ERLNEENRRL  120
RCTLGQITKS YKELQGQLFM AVQKLALGNK TEKKDAVNGT SSPIMSVPQF MDPRPSAALD  180
VNEPSASNDR TQDLSASPGK NMEVVSKEGE HQIPGKHASV EDGSDKTSQS WRPTKCLKLD  240
HSNKEEQVSE VPFRKARVSI RARSEAPLIS DGCQWRKYGQ KLAKGNPCPR AYYRCTMAVG  300
CPVRKQVQRC AEDKSILITT YEGNHNHPLP PAATALANTT SAAAAMLLSG STTSKDGLSL  360
PSFGYFPSLP YASTMAPSAA PFPIVTLDLT QGPNAVPFLW PLPSAATFPL PVHGYPQILG  420
HSMLAPPKLS AVSAMQLWQR PVSMVETVTA AIASDPNFSR ALAAAISKII GAPKRNNGGN  480
NNSSNGVATL PGSPQLPQSC TTFSAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21256332176WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6698250.0KF669825.1 Gossypium hirsutum WRKY transcription factor 51 (WRKY51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314146.10.0probable WRKY transcription factor 47
RefseqXP_017630074.10.0PREDICTED: probable WRKY transcription factor 47
TrEMBLA0A1U8L2250.0A0A1U8L225_GOSHI; probable WRKY transcription factor 47
STRINGGorai.007G117200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.13e-66WRKY family protein
Publications ? help Back to Top
  1. Dou L, et al.
    Genome-wide analysis of the WRKY gene family in cotton.
    Mol. Genet. Genomics, 2014. 289(6): p. 1103-21
    [PMID:24942461]