PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G0929 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 399aa MW: 45069 Da PI: 9.288 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 103.4 | 1.2e-32 | 110 | 214 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefel 92 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + +l Gh_A11G0929 110 FDKVVTPSDVGKLNRLVIPKQHAEKYfplhSSSNEKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDTVSFQRGvGEsGKHRL 207 89****************************66678899*************************************************66577788889 PP EEEEE-S CS B3 93 vvkvfrk 99 ++ ++r+ Gh_A11G0929 208 YIDWRRR 214 9999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-42 | 104 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.7E-30 | 107 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.55E-27 | 108 | 209 | No hit | No description |
PROSITE profile | PS50863 | 15.086 | 110 | 215 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-24 | 110 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.6E-30 | 110 | 214 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MNFVQDEDHE KNDEVTRENT SNFPFSTSSS SATSKYKDTV AQQHQKHLWL GTLDSREDYK 60 VQVPAIKFDK KLGQMDLSLG NNNEYQSNIG SCIGGDSGST TRCIEKEHMF DKVVTPSDVG 120 KLNRLVIPKQ HAEKYFPLHS SSNEKGLLLN FEDRNGKSWR FRYSYWNSSQ SYVMTKGWSR 180 FVKEKKLDAG DTVSFQRGVG ESGKHRLYID WRRRPNAPDP TTLAHIQLQS QFNFPHSVRW 240 GSLYSMPQPM CVPRNYEPLH CLNYSIYPNT HRQRQAITYG NAGQYYPRSS SGSHHHQIGA 300 VQAGGAEPMV IDSVPVVQGN KTVAKRLRLF GVNMECPNTT QTESSSSFPH GTIGSDDSPH 360 FSSFSRQSTL SNNNTSRQSG MQAEYSKKGK SSLSIDLDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-65 | 105 | 217 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-65 | 105 | 217 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017629751.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Swissprot | Q6EU30 | 1e-80 | Y2835_ORYSJ; B3 domain-containing protein Os02g0683500 | ||||
Swissprot | Q9MAN1 | 4e-81 | NGA3_ARATH; B3 domain-containing transcription factor NGA3 | ||||
TrEMBL | A0A2P5WGH4 | 0.0 | A0A2P5WGH4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G114200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01030.1 | 3e-83 | B3 family protein |
Publications ? help Back to Top | |||
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