PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Expression |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Gh_A11G0741

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 186aa MW: 20457.2 Da PI: 8.3781

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G0741	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.7	5.2e-40	9	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+k+C++apyf ++q +++fa+vhk++Gasn +k+l+++p ++r da+ +l+yeA ar+rdPvyG+vg++++lqqq+ +l+aela++ Gh_A11G0741 9 PCGACKFLRRKCVKGCIFAPYFDSDQgMAHFAAVHKVYGASNASKMLQRIPVHKRLDAVVTLCYEALARVRDPVYGCVGHLFTLQQQVVNLQAELAYT 106 7*********************9988******************************************************************99 PP DUF260 98 kee 100 +++ Gh_A11G0741 107 QAR 109 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.112	8	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.6E-39	9	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MSGNNGGGPC GACKFLRRKC VKGCIFAPYF DSDQGMAHFA AVHKVYGASN ASKMLQRIPV 60 HKRLDAVVTL CYEALARVRD PVYGCVGHLF TLQQQVVNLQ AELAYTQARL STLQRHPPSS 120 SEIGSELMSS SNMSTHFDPP QQTSVGLTSF PNSFDQVAEN EELQVLTREF VSRYLPGVRF 180 HPSTST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-37	5	110	7	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-37	5	110	7	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269\|PubMed:12068116}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00313	DAP	Transfer from AT2G45410	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016710129.1	1e-138	PREDICTED: LOB domain-containing protein 19-like
Refseq	XP_017614887.1	1e-138	PREDICTED: LOB domain-containing protein 19-like
Swissprot	O22132	3e-67	LBD19_ARATH; LOB domain-containing protein 19
TrEMBL	A0A0B0MXZ8	1e-137	A0A0B0MXZ8_GOSAR; LOB domain-containing 19-like protein
TrEMBL	A0A1U8LAF3	1e-137	A0A1U8LAF3_GOSHI; LOB domain-containing protein 19-like
TrEMBL	A0A2P5XPI9	1e-137	A0A2P5XPI9_GOSBA; Uncharacterized protein
STRING	Gorai.007G091600.1	1e-135	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45410.1	5e-68	LOB domain-containing protein 19