PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A11G0562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 25278.7 Da PI: 8.2744 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 105.6 | 4.2e-33 | 22 | 117 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++r+kC ++C+lapyfpa++ ++f++vhk+FG+sn +k+++++ ++e+r+++++sl++eA ++++dPv G +g ++k+ ++l+ k++ + Gh_A11G0562 22 ACAACKHQRKKCDENCILAPYFPADKCREFQAVHKVFGVSNATKIVRNAnSDEDRKKVADSLIWEAFCWQKDPVLGPYGDYRKIYEELSLYKKQSQ 117 7**********************************************9945566*******************************99998887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.016 | 21 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.7E-32 | 22 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MQRETSNGVA AAAAAASRVH PACAACKHQR KKCDENCILA PYFPADKCRE FQAVHKVFGV 60 SNATKIVRNA NSDEDRKKVA DSLIWEAFCW QKDPVLGPYG DYRKIYEELS LYKKQSQMML 120 LQDHDHQPTH PVFKMGPAHA VTPTKRLIDV KGAISDGTLR CYNPDVDVNS LVGFSGYPYP 180 SQSEKPVQEK AIHNTTTIVP LQYYASADVG FMNGKTLEST RWDNIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-16 | 23 | 115 | 12 | 103 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-16 | 23 | 115 | 12 | 103 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016710190.1 | 1e-172 | PREDICTED: LOB domain-containing protein 4-like | ||||
TrEMBL | A0A1U8L6F8 | 1e-171 | A0A1U8L6F8_GOSHI; LOB domain-containing protein 4-like | ||||
STRING | Gorai.007G069400.1 | 1e-168 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10539 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 4e-39 | LOB domain-containing protein 2 |