PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A11G0481

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 349aa MW: 39343.4 Da PI: 6.3908

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G0481	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	22.9	2.2e-07	140	161	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H Gh_A11G0481 140 FCEICGKGFKRDANLRMHMRAH 161 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.64E-6	135	162	No hit	No description
PROSITE profile	PS50157	12.133	139	166	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0015	139	161	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	141	161	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.6E-6	141	164	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	51	186	219	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	230	224	245	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MSNPGEPLRM SSDYPGTGGA SERQQEPDGD ADLRVPLQNL STVKRRMDSL QDFLSQSVNT 60 NTLISKDQMD HVSSEIVNAV HQTIINGAAL LSCAQIHYRN LAPVLNPTPE TKPEFEDYDG 120 GESEVIELDA VELLSEHLHF CEICGKGFKR DANLRMHMRA HGDQYKTPEA LAKKPEVKNT 180 VRKTQFSCPY EGCNRNKKHK KFRPLKSVIC VRNHFKRSHC PKMYCCNRCH KKSFSVLADL 240 KAHLKNCGVG EERKKWKCSC GNGFSRKDKL FGHISLFEGH MPAVAAEEDQ KLKGVVAMEE 300 AEDEDEDELT EKESYLDDGF FNDLDLLDGF GSFENYSLQD VLGPSRVVL

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MSNPGEPLRM SSDYPGTGGA SERQQEPDGD ADLRVPLQNL STVKRRMDSL QDFLSQSVNT  60
NTLISKDQMD HVSSEIVNAV HQTIINGAAL LSCAQIHYRN LAPVLNPTPE TKPEFEDYDG  120
GESEVIELDA VELLSEHLHF CEICGKGFKR DANLRMHMRA HGDQYKTPEA LAKKPEVKNT  180
VRKTQFSCPY EGCNRNKKHK KFRPLKSVIC VRNHFKRSHC PKMYCCNRCH KKSFSVLADL  240
KAHLKNCGVG EERKKWKCSC GNGFSRKDKL FGHISLFEGH MPAVAAEEDQ KLKGVVAMEE  300
AEDEDEDELT EKESYLDDGF FNDLDLLDGF GSFENYSLQD VLGPSRVVL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681063.1	0.0	PREDICTED: zinc finger protein STOP1 homolog
Swissprot	Q943I6	2e-70	STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBL	A0A1U8IXF8	0.0	A0A1U8IXF8_GOSHI; zinc finger protein STOP1 homolog
STRING	Gorai.007G060600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16077	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	3e-72	C2H2 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]