PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A11G0462
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 194aa    MW: 22584 Da    PI: 9.9627
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A11G0462genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.51.3e-261059251
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 ri+n+  rqvtfskRr+g++KKA+EL +LCdaev ++ifss+gklye++s
  Gh_A11G0462 10 RIDNSASRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSSGKLYEFAS 59
                 8***********************************************86 PP
2K-box81.81.6e-2776169497
        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                  +++ s+ +++ + +q+e+a Lk++++nLq ++R+l+Ge+L  L +++Lq+Le+qLe slk +R kK+++l+++ieel ++   +++en +L kk
  Gh_A11G0462  76 HQQLSNPSSEVKFWQREAAILKQQLQNLQDNHRQLMGEQLYGLRVEDLQNLENQLEMSLKGVRMKKERILTNEIEELNRRGSLIHQENVELFKK 169
                  5555678899*******************************************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.342161IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.53E-42278No hitNo description
SuperFamilySSF554551.7E-32291IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.9E-2583169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.28686176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGRGKIAIRR IDNSASRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS SGKLYEFAST  60
SMKTVIERYN TLKEEHQQLS NPSSEVKFWQ REAAILKQQL QNLQDNHRQL MGEQLYGLRV  120
EDLQNLENQL EMSLKGVRMK KERILTNEIE ELNRRGSLIH QENVELFKKD NKKECSDELK  180
RYVTPVHPQQ NPCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-23182182MEF2 CHIMERA
6byy_B4e-23182182MEF2 CHIMERA
6byy_C4e-23182182MEF2 CHIMERA
6byy_D4e-23182182MEF2 CHIMERA
6bz1_A4e-23182182MEF2 CHIMERA
6bz1_B4e-23182182MEF2 CHIMERA
6bz1_C4e-23182182MEF2 CHIMERA
6bz1_D4e-23182182MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556330.0KC155633.1 Gossypium hirsutum MADS box protein MADS38 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016681184.11e-119PREDICTED: MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP496e-88MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1U8IZ121e-118A0A1U8IZ12_GOSHI; MADS-box transcription factor 23-like isoform X2
STRINGGorai.007G058200.11e-117(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.18e-89AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]