PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A11G0454 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 287aa MW: 31560.7 Da PI: 9.1708 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 141 | 195 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k Gh_A11G0454 141 RKKLRLTKQQSALLEESFKQHSTLNPNQKQALARQLNLKPRQVEVWFQNRRARTK 195 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 123.9 | 7.8e-40 | 141 | 230 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k+q++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +l Gh_A11G0454 141 RKKLRLTKQQSALLEESFKQHSTLNPNQKQALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTNENRRLQKELQELR-SL 230 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.248 | 137 | 197 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-15 | 139 | 201 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.82E-18 | 139 | 205 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-17 | 141 | 195 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.4E-16 | 141 | 195 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.23E-17 | 141 | 198 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 172 | 195 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.2E-21 | 197 | 241 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 8.0E-11 | 197 | 231 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 287 aa Download sequence Send to blast |
MGLDDACNTG LVLGLGFSST PETPSKADNQ KPKKSTAKVA PVTSFEPFLT LGLSGDSYGV 60 TVAKKVDVNN KGGGYLHHRH EDSPPTAAAG DLYRPGSPPS AVSSFSSGRV KRERDHSCEE 120 VEVEKNSCRV SDEDEDGVNA RKKLRLTKQQ SALLEESFKQ HSTLNPNQKQ ALARQLNLKP 180 RQVEVWFQNR RARTKLKQTE VDCEFLKRCC ETLTNENRRL QKELQELRSL KTAAQPFCMN 240 MPAATLTMCP SCERIGGVAG DGNSKNPFSM PSKPRFYKPV TSPSAAC |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 189 | 197 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636249.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 8e-97 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A0B0PLD6 | 0.0 | A0A0B0PLD6_GOSAR; Homeobox-leucine zipper HAT22-like protein | ||||
STRING | Gorai.007G057100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-98 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|