PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 207aa MW: 23331.4 Da PI: 6.9254

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A11G0367	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.3	1.9e-18	99	149	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ +r++lg+f+t +Aaka++ a+ k++g Gh_A11G0367 99 HYRGVRRRP-WGKFAAEIRDPTRK--GRRVWLGTFDTDVDAAKAYDCAAFKMRG 149 7******.******8542..4******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	1.4E-31	98	158	IPR001471	AP2/ERF domain
SMART	SM00380	3.7E-36	99	163	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.25	99	157	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-22	99	159	IPR016177	DNA-binding domain
Pfam	PF00847	1.3E-13	99	149	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.8E-13	100	111	IPR001471	AP2/ERF domain
CDD	cd00018	5.54E-24	107	157	No hit	No description
PRINTS	PR00367	3.8E-13	139	159	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MTSVEESTTL EFIHQHLLGD FTSADAFISS LDFGLSQLQN YQVPELYQPH SPVSDPNCRI 60 PEIFGYDVKP EVVELASPSV FISGSKMEQK VLVCEERRHY RGVRRRPWGK FAAEIRDPTR 120 KGRRVWLGTF DTDVDAAKAY DCAAFKMRGQ KAILNFPLEA GQATPPATTC RKRGKEKRNK 180 SPESDVMSQV SSELASAVVK EEEDKPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-28	98	158	4	64	ATERF1
3gcc_A	3e-28	98	158	4	64	ATERF1
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109874292	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016708664.1	1e-155	PREDICTED: ethylene-responsive transcription factor ERF107-like
Swissprot	Q9LY05	4e-50	EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBL	A0A1U8L692	1e-153	A0A1U8L692_GOSHI; ethylene-responsive transcription factor ERF107-like
TrEMBL	A0A2P5Y4R9	1e-153	A0A2P5Y4R9_GOSBA; Uncharacterized protein
STRING	Gorai.007G046100.1	1e-134	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3229	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07580.1	8e-42	ERF family protein

Publications ? help Back to Top
Kim H,Go YS,Suh MC DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves. Plant Cell Physiol., 2018. 59(5): p. 966-977 [PMID:29425344]