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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gh_A11G0139 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 216aa MW: 25471.3 Da PI: 6.0515 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A11G0139 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58.1 | 1.5e-18 | 36 | 89 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ft++q++ Le+ Fe++ ++ +++ + A++lgL+ rqV++WFqNrRa+ k
Gh_A11G0139 36 NKRRFTDDQIRLLESIFESETKLEPRKKLQVARELGLQPRQVSIWFQNRRARLK 89
5679************************************************98 PP
|
| 2 | HD-ZIP_I/II | 117.7 | 6.3e-38 | 36 | 127 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+krr++++q++lLE+ Fe+e+kLep++K ++areLglqprqv +WFqnrRAR k+kq+Ekdy +L+++yd+l+++ e+L++e++ L +++++
Gh_A11G0139 36 NKRRFTDDQIRLLESIFESETKLEPRKKLQVARELGLQPRQVSIWFQNRRARLKSKQMEKDYVTLRDNYDKLVSRFEMLKEEKQCLISQMEK 127
79************************************************************************************999976 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 216 aa
Download sequence Send
to blast |
METRDHHHPS SNELILQQYS QAPPPGKNNS NNSSSNKRRF TDDQIRLLES IFESETKLEP 60
RKKLQVAREL GLQPRQVSIW FQNRRARLKS KQMEKDYVTL RDNYDKLVSR FEMLKEEKQC 120
LISQMEKLSE MLAESETNGV NKVSKVGSTE HEAEPGSSFK QEDDGVLGLE TQKGHREIED 180
AVKHGDEFLS MDEYRDYDDQ FDHLCSRWHH WLNFWT
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX584309 | 1e-135 | JX584309.1 Gossypium hirsutum clone NBRI_GE17582 microsatellite sequence. |
